| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,595,719 | A→G | 30.0% | V293V (GTT→GTC) | arsB ← | arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,595,719 | 0 | A | G | 30.0% | 168.6 / 97.2 | 130 | V293V (GTT→GTC) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base A (46/45); new base G (18/21); total (64/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 142 total aligned reads displayed.
CGTTATCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCC > Exported/2595652‑2595785 | cGTTATCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAacc < 1:5526257/71‑1 (MQ=255) ttATCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATaaa < 1:4828598/67‑1 (MQ=255) tATCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAaccac < 1:2842828/70‑1 (MQ=255) aTCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAaccac > 1:2871876/1‑69 (MQ=255) aTCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAaccac > 1:4305840/1‑69 (MQ=255) aTCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAacca > 1:2537540/1‑68 (MQ=255) aTCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAacca > 1:5442086/1‑68 (MQ=255) aTCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAacc > 1:2400230/1‑67 (MQ=255) aTCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAacc > 1:4164990/1‑67 (MQ=255) cGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGa < 1:5487768/70‑1 (MQ=255) cGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGa < 1:2578486/70‑1 (MQ=255) cGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGAt < 1:4913772/71‑1 (MQ=255) cGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGAt < 1:394464/71‑1 (MQ=255) ccAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATa < 1:5692575/70‑1 (MQ=255) cGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCcg < 1:4507846/71‑1 (MQ=255) cGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCcg < 1:2684351/71‑1 (MQ=255) tGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCcgagc > 1:1370406/1‑71 (MQ=255) gAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAac > 1:962069/1‑51 (MQ=255) gAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAac > 1:5452169/1‑51 (MQ=255) aCGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGagaa < 1:3268683/71‑1 (MQ=255) aCGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGagaa < 1:434414/71‑1 (MQ=255) aCGCCAGAAAGATATTCCTTTAATCCAGCATTGCGCAGGCCATaaa > 1:4252219/1‑46 (MQ=255) aCGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATaaa > 1:3645637/1‑46 (MQ=255) aCGACAGAAAGATATTCCGTTAATCCGGCATTGAGCAGGCCATaaa > 1:545180/1‑46 (MQ=39) gCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGagaaaa < 1:951590/71‑3 (MQ=255) ccAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAAt < 1:328670/71‑1 (MQ=255) ccAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAaccac > 1:3714069/1‑47 (MQ=255) ccAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAaccac > 1:1359151/1‑47 (MQ=255) ccAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGAt < 1:5096957/71‑1 (MQ=255) cAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAAt > 1:4179180/1‑70 (MQ=255) cAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAAt < 1:3390875/70‑1 (MQ=255) gAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATaa < 1:885608/39‑1 (MQ=255) aaaGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGagaa > 1:3888093/1‑64 (MQ=255) aaaGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGagaa > 1:1902425/1‑64 (MQ=255) aGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:5290268/1‑71 (MQ=255) atatTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGagaag < 1:3366957/61‑1 (MQ=255) atTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGAt > 1:4202109/1‑61 (MQ=255) ttCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCcgagc < 1:343597/52‑1 (MQ=255) ttCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3432388/70‑1 (MQ=255) ttCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:639752/70‑1 (MQ=255) tCCGTTAATCCGGCATTGCGCAGGCCATAAaccacc > 1:1406758/1‑36 (MQ=255) tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc > 1:4215380/1‑69 (MQ=255) ccGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAg > 1:3361955/1‑71 (MQ=255) ccGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGc > 1:1502745/1‑68 (MQ=255) cGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGagaaga > 1:3009797/1‑56 (MQ=255) cGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa < 1:2437817/69‑1 (MQ=255) tAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAggggg > 1:2040723/1‑71 (MQ=255) aaTCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAggggg < 1:5190734/70‑1 (MQ=255) tCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:4721886/62‑1 (MQ=255) tCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGc < 1:553044/69‑1 (MQ=255) tCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGc < 1:177354/69‑1 (MQ=255) cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCt < 1:4706119/57‑1 (MQ=255) gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATc > 1:1661599/1‑54 (MQ=255) gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATc > 1:5226937/1‑54 (MQ=255) cATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATc > 1:5480005/1‑53 (MQ=255) cATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATc > 1:5413957/1‑53 (MQ=255) cATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACcgcg > 1:311521/1‑70 (MQ=255) cATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACcgcg > 1:1359999/1‑70 (MQ=255) cATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAggg > 1:1810563/1‑61 (MQ=255) ttGCGCAGGCCATAGACCACGATGTACATGCCCAGTgaga < 1:2914534/40‑1 (MQ=255) ttGCGCAGGCCATAGACCACGATGTACATGCCCAGTgaga < 1:628327/40‑1 (MQ=255) ttGCGCAGGCCATAGACCACGATGTACATGCCCAGTgaga < 1:5646928/40‑1 (MQ=255) ttGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCa > 1:1753101/1‑70 (MQ=255) ttGCGCAGGCCATAAACCACCAGATACATGCCGAGCGagaag < 1:5193117/42‑1 (MQ=255) ttGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAg < 1:4337317/71‑1 (MQ=255) tGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAg > 1:4959400/1‑70 (MQ=255) tGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1414141/47‑1 (MQ=255) tGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:4538676/47‑1 (MQ=255) tGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:4774993/47‑1 (MQ=255) tGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:5031492/47‑1 (MQ=255) gcgcAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGAt > 1:4017813/1‑48 (MQ=255) gcgcAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCAtggc > 1:4981360/1‑57 (MQ=255) gcgcAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGa > 1:2553886/1‑71 (MQ=255) gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa > 1:1478264/1‑47 (MQ=255) gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa > 1:5657266/1‑47 (MQ=255) cgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGAc < 1:3725958/71‑1 (MQ=255) cAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACtt > 1:117966/1‑71 (MQ=255) aGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACttt < 1:3163220/71‑1 (MQ=255) gCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTAc > 1:3936944/1‑71 (MQ=255) ccATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACtttt > 1:176605/1‑68 (MQ=255) ccATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACtttt > 1:3117455/1‑68 (MQ=255) ccATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:5705/39‑1 (MQ=255) ccATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:4000200/39‑1 (MQ=255) ccATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:5257019/39‑1 (MQ=255) cATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:1163787/1‑48 (MQ=255) aTAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGAc < 1:4301593/63‑1 (MQ=255) aTAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGAc < 1:1097056/63‑1 (MQ=255) aTAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGAc < 1:192852/63‑1 (MQ=255) aTAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGAc < 1:786349/63‑1 (MQ=255) aTAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3889169/43‑1 (MQ=255) aTAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:880141/43‑1 (MQ=255) aTAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAg > 1:5338130/1‑46 (MQ=255) tAAACCACCAGATATATGCCGAGCGAGAAGATGACAATCTGCCAggggg < 1:4049902/49‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1484990/36‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3462397/42‑1 (MQ=255) aaaCCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:2089697/1‑37 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:4664768/1‑42 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:5545859/1‑42 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:1519448/1‑42 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:1532783/1‑51 (MQ=255) | CGTTATCCGCCAGCACGTTGAGTACGCCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCC > Exported/2595652‑2595785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |