| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,596,172 | C→A | 22.0% | A142A (GCG→GCT) | arsB ← | arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,596,172 | 0 | C | A | 22.0% | 155.6 / 26.0 | 68 | A142A (GCG→GCT) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base C (23/30); new base A (8/7); total (31/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01 | |||||||||||
GAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACAATCGG > Exported/2596107‑2596240 | gagaCGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCAt > 1:5038161/4‑71 (MQ=255)gagaCGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCAt > 1:618636/4‑71 (MQ=255)gAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCAt < 1:332899/71‑1 (MQ=255)gAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCAt < 1:5361754/71‑1 (MQ=255) cGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACg < 1:5620776/71‑1 (MQ=255) cGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACg < 1:1992297/71‑1 (MQ=255) cGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGAca < 1:2088555/71‑2 (MQ=255) gATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGgccgcc < 1:1043670/64‑1 (MQ=255) gATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGa < 1:1032259/71‑1 (MQ=255) gATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGa < 1:1039141/71‑1 (MQ=255) ttCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGc < 1:2205322/71‑1 (MQ=255) ttCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGc < 1:2890870/71‑1 (MQ=255) ttCACCAGCTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCAt < 1:2379629/62‑1 (MQ=255) cACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGcc < 1:4629170/70‑1 (MQ=255) cACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGcc < 1:5543577/70‑1 (MQ=255) cACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGc > 1:3401340/1‑69 (MQ=255) cACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGcc < 1:2777360/70‑1 (MQ=255) cAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCg < 1:1548326/71‑1 (MQ=255) cAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAgtg > 1:3791224/1‑69 (MQ=255) aGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCAt > 1:3513260/1‑56 (MQ=255) aGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCAt > 1:3866034/1‑56 (MQ=255) aGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCa > 1:2594433/1‑67 (MQ=255) ggTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCg > 1:4563082/1‑69 (MQ=255) ggTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAgtgtc > 1:1878442/1‑70 (MQ=255) ggTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAgtgtc > 1:2786185/1‑70 (MQ=255) gTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGAcaa < 1:4699307/59‑3 (MQ=255) gTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAgtg < 1:204203/68‑3 (MQ=255) gagaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGcc < 1:2455605/71‑1 (MQ=255) gaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:5668941/71‑1 (MQ=255) gaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:2713506/71‑1 (MQ=255) gaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:1011863/71‑1 (MQ=255) gaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:3078189/71‑1 (MQ=255) aCAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGccctg > 1:2704228/1‑68 (MQ=255) aCAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGccctg < 1:1373634/71‑4 (MQ=255) cAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCttt < 1:2206291/70‑1 (MQ=255) cAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCttt < 1:2081361/70‑1 (MQ=255) tAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACt > 1:3766970/1‑70 (MQ=255) aGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGaa < 1:679941/71‑1 (MQ=255) aGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGa < 1:3919204/70‑1 (MQ=255) aGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATAACGaa > 1:2443821/1‑47 (MQ=255) aGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACaaa > 1:4412467/1‑47 (MQ=255) aGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGaa > 1:1293074/1‑71 (MQ=255) gCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAg < 1:2946016/71‑1 (MQ=255) gCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCcag > 1:1390934/1‑71 (MQ=255) tATCGGCAATTAATCCGGCCGCCATCACGAACGCCAGCGt < 1:1241997/40‑1 (MQ=255) aTCGGCAATGAATCCGGCCGCCATCACGAACGCCa > 1:3517808/1‑35 (MQ=255) aTCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAg > 1:788957/1‑41 (MQ=255) aTCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGaa > 1:4666977/1‑54 (MQ=255) tCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAgcagca < 1:925310/70‑1 (MQ=255) ggCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGaa > 1:2865199/1‑51 (MQ=255) cAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGc > 1:1820521/1‑70 (MQ=255) cAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGc > 1:94738/1‑70 (MQ=255) aaTGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGa > 1:2228028/1‑71 (MQ=255) aTGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:299745/40‑1 (MQ=255) aTGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGAt < 1:5395251/71‑1 (MQ=255) tGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGcc < 1:5668350/37‑1 (MQ=255) tGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:5542945/39‑1 (MQ=255) tGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCca < 1:2866961/57‑1 (MQ=255) gAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAAcc > 1:2135383/1‑47 (MQ=255) gAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGa > 1:5329713/1‑71 (MQ=255) gAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGa > 1:4338142/1‑71 (MQ=255) aTCCGGCCGCCATCACGAACGCCAGCGTAGTGCCttt < 1:5331328/37‑1 (MQ=255) tCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACaa > 1:3221777/1‑71 (MQ=255) cGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGAc > 1:3868169/1‑67 (MQ=255) cGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGAc > 1:1018803/1‑67 (MQ=255) cGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGAc > 1:1849414/1‑67 (MQ=255) cGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACAATc > 1:2272012/1‑71 (MQ=255) cGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACAATc < 1:5071510/71‑1 (MQ=255) ggCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACAATCg < 1:2678734/71‑1 (MQ=255) gccgccATCACGAACGCCAGCGTAGTGCCTTTAATGAACCCTAAAGCCAGCAGCATGGCGATGACAATCgg > 1:5388546/1‑71 (MQ=255) ccgccATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCagcagc > 1:4858470/1‑53 (MQ=255) | GAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACAATCGG > Exported/2596107‑2596240 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |