| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,662,872 | T→C | 6.0% | intergenic (‑44/‑145) | rtcR ← / → rtcB | sigma 54‑dependent transcriptional regulator of rtcBA expression/conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,662,872 | 0 | T | C | 6.0% | 189.6 / 2.2 | 66 | intergenic (‑44/‑145) | rtcR/rtcB | sigma 54‑dependent transcriptional regulator of rtcBA expression/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (27/35); new base C (2/2); total (29/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.54e-01 | |||||||||||
AAGCCAAAAGCCACTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGAATTAAAA > Exported/2662803‑2662938 | aagccaaaagccaCTGTTTTACTCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTg < 1:3111058/71‑1 (MQ=255)aagccaaaagccaCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTg > 1:4572051/1‑71 (MQ=255)aagccaaaagccaCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTg < 1:3192046/71‑1 (MQ=255) agccaaaagccaCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTgg > 1:1486444/1‑71 (MQ=255) caaaagccaCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCtt > 1:3703833/1‑71 (MQ=255) caaaagccaCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCtt > 1:1860532/1‑71 (MQ=255) aaagccaCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTg < 1:5627366/71‑1 (MQ=255) aagccaCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGc < 1:4933504/71‑1 (MQ=255) agccaCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCg < 1:3614063/71‑1 (MQ=255) agccaCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCg < 1:2357371/71‑1 (MQ=255) agccaCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCg < 1:4324270/71‑1 (MQ=255) caCTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCggg < 1:4702398/70‑1 (MQ=255) tGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAAt > 1:1734513/1‑71 (MQ=255) tGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAAt > 1:1478383/1‑71 (MQ=255) gTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGc < 1:3583512/58‑1 (MQ=255) gTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGc < 1:4968941/58‑1 (MQ=255) ttttACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAAtc < 1:3434125/70‑1 (MQ=255) tttACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAAtct > 1:3723354/1‑70 (MQ=255) ttACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGaaa > 1:5109758/1‑66 (MQ=255) ttACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAAtctc < 1:4391898/70‑1 (MQ=255) tACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTcc < 1:1698806/70‑1 (MQ=255) tACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTcc < 1:2869614/70‑1 (MQ=255) tACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTcc < 1:5048090/70‑1 (MQ=255) tACGCATCTTAGATATCCTTATAAAAGACGAGATTTCATTATCGTTAAATCGGCTTTGCGGGAAATCTcc < 1:689451/70‑1 (MQ=255) tACGCATCTTAGATATCCTTATAAAAGACGAGATTTCATTATCGGTAAATCGGCTTTGCGGGAAATCTcc < 1:4562811/70‑1 (MQ=255) aCGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCg > 1:1312398/1‑70 (MQ=255) gCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGtt < 1:4430214/71‑1 (MQ=255) tCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTgg < 1:1641511/47‑1 (MQ=255) tCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCt > 1:2250792/1‑49 (MQ=255) tCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCt > 1:4344058/1‑49 (MQ=255) ttAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCg > 1:1521712/1‑52 (MQ=255) ttAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTAc > 1:4710040/1‑68 (MQ=255) tAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGAc > 1:142300/1‑71 (MQ=255) aGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACgg < 1:634806/68‑1 (MQ=255) gATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACg < 1:1063710/70‑1 (MQ=255) atatCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTa < 1:1375955/71‑1 (MQ=255) ccTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGaaa > 1:729746/1‑49 (MQ=255) cTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGa > 1:1647707/1‑70 (MQ=255) taAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCggg < 1:4779068/41‑1 (MQ=255) aaGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACg > 1:3197803/1‑53 (MQ=255) aaGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACg > 1:2608953/1‑53 (MQ=255) aaGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACg > 1:5165286/1‑53 (MQ=255) aaGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCt > 1:4464027/1‑71 (MQ=255) aGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCtt < 1:137904/71‑1 (MQ=255) aCGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAAtctc < 1:2744316/42‑1 (MQ=255) aCGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAAtctc < 1:3631012/42‑1 (MQ=255) aCGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTaa > 1:1277313/1‑57 (MQ=255) cGATATTTCATTATCTGTAAATTGGCTTTGCGGGa < 1:3941655/35‑1 (MQ=255) cGAGATTTCATTATCGGTAAATCGGCTTTGCGGGAAATCTCCGTTTACGGACGTAAAAAtata > 1:5322624/1‑63 (MQ=255) cGAGATTTCATTATCGGTAAATCGGCTTTGCGGGAAATCTCCGTTTACGGACGTAAAAAtata > 1:2565239/1‑63 (MQ=255) atatTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCtttttt < 1:600098/70‑1 (MQ=255) atTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCttt < 1:2161843/65‑1 (MQ=255) cATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGa > 1:1591627/1‑43 (MQ=255) aTCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGaa > 1:1521795/1‑71 (MQ=255) aTCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGaa > 1:2231509/1‑71 (MQ=255) aTCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGa < 1:729549/70‑1 (MQ=255) ggTAAATTGGCTTTGCGGGAAGTCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGAATTa < 1:2292976/71‑1 (MQ=255) ggTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGAATTa < 1:2616705/71‑1 (MQ=255) ggTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGAATTa < 1:3118744/71‑1 (MQ=255) aaaTTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGAATTaaa > 1:3281735/1‑70 (MQ=255) aaTTGGCTTTGCGGGAAATCTCCGGTTACGGACGTaaa < 1:356332/38‑1 (MQ=255) aaTTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCtt > 1:2612550/1‑49 (MQ=255) aaTTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGAATTaaaa < 1:2538305/70‑1 (MQ=255) aaTTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGAATTaaaa < 1:4439980/70‑1 (MQ=255) aaTTGGCTTTGCCGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAAc < 1:3526366/58‑1 (MQ=255) aTTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTaaaa > 1:787774/1‑56 (MQ=255) tGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCt > 1:4225044/1‑45 (MQ=255) | AAGCCAAAAGCCACTGTTTTACGCATCTTAGATATCCTTATAAAAGACGATATTTCATTATCGGTAAATTGGCTTTGCGGGAAATCTCCGGTTACGGACGTAAAGATATAATCTTTTTTAAAACAATGAATTAAAA > Exported/2662803‑2662938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |