| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,790,638 | C→T | 26.8% | intergenic (+33/‑742) | pgi → / → ubiC | glucosephosphate isomerase/chorismate pyruvate lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,790,638 | 0 | C | T | 26.8% | 78.9 / 21.9 | 41 | intergenic (+33/‑742) | pgi/ubiC | glucosephosphate isomerase/chorismate pyruvate lyase |
| Reads supporting (aligned to +/- strand): ref base C (18/12); new base T (6/5); total (24/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
TGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGA > Exported/2790569‑2790708 | tGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCa < 1:1229526/71‑1 (MQ=255) aTTAACCGCTATAAAGCGTGGAGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCa > 1:257310/1‑64 (MQ=255) ttAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCAt > 1:1736748/1‑71 (MQ=255) ccGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg > 1:1581225/1‑71 (MQ=255) gCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc > 1:1371649/1‑70 (MQ=255) gCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa < 1:4034916/71‑1 (MQ=255) taAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCg < 1:5656318/71‑1 (MQ=255) aaGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCa > 1:4904105/1‑51 (MQ=255) aaGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCa > 1:4731224/1‑51 (MQ=255) aGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATg < 1:338673/71‑1 (MQ=255) tGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcg < 1:48469/48‑1 (MQ=255) tGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTg < 1:1345077/71‑1 (MQ=255) ttAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcg > 1:3604181/1‑71 (MQ=255) ttAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcg > 1:5129117/1‑71 (MQ=255) aaTCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcgcg > 1:4125487/1‑71 (MQ=255) tcatcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCgg > 1:727137/1‑70 (MQ=255) tcatcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGt > 1:2088485/1‑71 (MQ=255) atcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcg > 1:4069955/1‑71 (MQ=255) atcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTc > 1:5487258/1‑70 (MQ=255) gtcgATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg > 1:3050028/1‑41 (MQ=255) gtcgATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg > 1:3544275/1‑41 (MQ=255) tcgATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGc > 1:5344568/1‑50 (MQ=255) gATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCtt < 1:1619543/71‑1 (MQ=255) cgaatGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt < 1:784617/68‑1 (MQ=11) aatGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTAt < 1:801585/70‑1 (MQ=11) gTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg < 1:361995/71‑1 (MQ=11) gTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAACAGATGCCTGATGCGACGCTACCGCGTCTTATCa < 1:5478651/70‑1 (MQ=11) tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGc < 1:2712815/42‑1 (MQ=255) tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAgg > 1:2971764/1‑71 (MQ=255) tAGGACGGATAAGGCGTTTACGCCGCATCCGGCAACAGATGCCTGATGCGACGCTACCGCGTCTTATCAgg > 1:1950254/1‑71 (MQ=11) tAGGACGGATAAGGCGTTTACGCCGCATCCGGCAACAGATGCCTGATGCGACGCTACCGCGTCTTATCAgg > 1:2454585/1‑71 (MQ=11) ggacGGATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGCGACGCTGAAGCGTCTTATCATGcc < 1:4841860/68‑1 (MQ=1) gacGGATAAGGCGTTTACGCCGCATCCGGCAACAGATGCCTGATGCGACGCTACCGCGTCTTATCAGGcc > 1:2180215/3‑70 (MQ=14) ccGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCg < 1:166887/46‑1 (MQ=255) cGGATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTAc < 1:5246677/71‑1 (MQ=11) ggATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACa > 1:4784248/1‑71 (MQ=11) tAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACatag > 1:2545967/1‑68 (MQ=11) tAAGGCGTTTACGCCGCATCCGGCAACAGATGCCTGATGCGACGCTACCGCGTCTTATCAGGCCTACaaaa > 1:2750305/1‑68 (MQ=11) ttCACGCCGCATCCGGCAACCTATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTc < 1:1398961/65‑1 (MQ=255) ttCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcgc > 1:4074165/1‑44 (MQ=255) ttCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGcc < 1:2228975/57‑1 (MQ=255) cACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGccga > 1:4244148/1‑55 (MQ=255) cACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGcc < 1:2803497/55‑1 (MQ=255) cACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGa > 1:5346588/1‑71 (MQ=255) | TGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGA > Exported/2790569‑2790708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |