| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,790,643 | C→T | 10.0% | intergenic (+38/‑737) | pgi → / → ubiC | glucosephosphate isomerase/chorismate pyruvate lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,790,643 | 0 | C | T | 10.0% | 100.8 / 2.8 | 40 | intergenic (+38/‑737) | pgi/ubiC | glucosephosphate isomerase/chorismate pyruvate lyase |
| Reads supporting (aligned to +/- strand): ref base C (22/14); new base T (2/2); total (24/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.01e-01 | |||||||||||
TTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATG > Exported/2790577‑2790712 | ttAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCAt > 1:1736748/1‑71 (MQ=255) ccGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg > 1:1581225/1‑71 (MQ=255) gCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc > 1:1371649/1‑70 (MQ=255) gCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa < 1:4034916/71‑1 (MQ=255) taAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCg < 1:5656318/71‑1 (MQ=255) aGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATg < 1:338673/71‑1 (MQ=255) tGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTg < 1:1345077/71‑1 (MQ=255) ttAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcg > 1:3604181/1‑71 (MQ=255) ttAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcg > 1:5129117/1‑71 (MQ=255) aaTCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcgcg > 1:4125487/1‑71 (MQ=255) tcatcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCgg > 1:727137/1‑70 (MQ=255) tcatcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGt > 1:2088485/1‑71 (MQ=255) atcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcg > 1:4069955/1‑71 (MQ=255) atcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTc > 1:5487258/1‑70 (MQ=255) gtcgATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg > 1:3050028/1‑41 (MQ=255) gtcgATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg > 1:3544275/1‑41 (MQ=255) tcgATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGc > 1:5344568/1‑50 (MQ=255) gATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCtt < 1:1619543/71‑1 (MQ=255) cgaatGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt < 1:784617/68‑1 (MQ=11) aatGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTAt < 1:801585/70‑1 (MQ=11) gTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg < 1:361995/71‑1 (MQ=11) gTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAACAGATGCCTGATGCGACGCTACCGCGTCTTATCa < 1:5478651/70‑1 (MQ=11) tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGc < 1:2712815/42‑1 (MQ=255) tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAgg > 1:2971764/1‑71 (MQ=255) tAGGACGGATAAGGCGTTTACGCCGCATCCGGCAACAGATGCCTGATGCGACGCTACCGCGTCTTATCAgg > 1:1950254/1‑71 (MQ=11) tAGGACGGATAAGGCGTTTACGCCGCATCCGGCAACAGATGCCTGATGCGACGCTACCGCGTCTTATCAgg > 1:2454585/1‑71 (MQ=11) ggacGGATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGCGACGCTGAAGCGTCTTATCATGcc < 1:4841860/68‑1 (MQ=1) gacGGATAAGGCGTTTACGCCGCATCCGGCAACAGATGCCTGATGCGACGCTACCGCGTCTTATCAGGcc > 1:2180215/3‑70 (MQ=14) ccGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCg < 1:166887/46‑1 (MQ=255) cGGATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTAc < 1:5246677/71‑1 (MQ=11) ggATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACa > 1:4784248/1‑71 (MQ=11) tAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACatag > 1:2545967/1‑68 (MQ=11) tAAGGCGTTTACGCCGCATCCGGCAACAGATGCCTGATGCGACGCTACCGCGTCTTATCAGGCCTACaaaa > 1:2750305/1‑68 (MQ=11) ttCACGCCGCATCCGGCAACCTATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTc < 1:1398961/65‑1 (MQ=255) ttCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcgc > 1:4074165/1‑44 (MQ=255) ttCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGcc < 1:2228975/57‑1 (MQ=255) cACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGccga > 1:4244148/1‑55 (MQ=255) cACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGcc < 1:2803497/55‑1 (MQ=255) cACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGa > 1:5346588/1‑71 (MQ=255) aCGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCg > 1:3721529/1‑69 (MQ=255) cgccgcATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGata < 1:874482/71‑1 (MQ=255) gccgcATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATc > 1:1057757/1‑47 (MQ=255) ccgcATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATg < 1:5328310/71‑1 (MQ=255) | TTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATG > Exported/2790577‑2790712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |