| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,919,768 | T→C | 10.5% | intergenic (‑73/‑89) | argI ← / → yjgD | ornithine carbamoyltransferase 1/conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,919,768 | 0 | T | C | 10.5% | 325.8 / 22.7 | 123 | intergenic (‑73/‑89) | argI/yjgD | ornithine carbamoyltransferase 1/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (65/45); new base C (7/6); total (72/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 136 total aligned reads displayed.
ATCCCTCCTGTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGA > Exported/2919698‑2919838 | aTCCCTCCTGTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCt < 1:4312853/71‑1 (MQ=255) tCCCTCCTGTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTa < 1:5315923/71‑1 (MQ=255) cctcctGTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTaaa < 1:2922780/71‑1 (MQ=255) cctcctGTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTaaa < 1:1618768/71‑1 (MQ=255) cctcctGTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTaa < 1:2596135/70‑1 (MQ=255) ctGTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCa > 1:2594511/1‑70 (MQ=255) ctGTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCa > 1:3638909/1‑70 (MQ=255) atgtgGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCa > 1:765822/2‑70 (MQ=255) gtgGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATa > 1:5183378/1‑70 (MQ=255) gtgGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATa > 1:3742826/1‑70 (MQ=255) tgGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATaaa > 1:1274731/1‑71 (MQ=255) ggCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAAt > 1:5331100/1‑71 (MQ=255) ggCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAAt > 1:4606330/1‑71 (MQ=255) gCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATaa > 1:3774842/1‑68 (MQ=255) cTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATGAATCt < 1:4456394/71‑1 (MQ=255) gCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTc < 1:3988443/71‑1 (MQ=255) tCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCt < 1:4184464/50‑1 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc > 1:2637125/1‑60 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTcaca > 1:3737516/1‑69 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaaa < 1:725143/71‑1 (MQ=255) tGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc < 1:622186/58‑1 (MQ=255) tGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc < 1:4783280/58‑1 (MQ=255) tGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTcaca < 1:4754993/67‑1 (MQ=255) aaTTAATATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg > 1:572657/1‑71 (MQ=255) aaTTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTg < 1:2476002/71‑1 (MQ=255) aaTTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg < 1:1210193/71‑1 (MQ=255) tAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAg > 1:4909873/1‑71 (MQ=255) aaaaTTCACTTTATATGTGTAATTATTCATTTGCACCCCCATTTCACAATTCTTTCTTACAAAGGTGGAgg > 1:4112108/1‑71 (MQ=255) aaaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTaaa > 1:153737/1‑43 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAAt > 1:518330/1‑50 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa > 1:3431875/1‑61 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAgg < 1:4147958/70‑1 (MQ=255) aaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:1688589/70‑1 (MQ=255) ttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:346257/1‑70 (MQ=255) tCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:4259186/1‑60 (MQ=255) tCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:5297771/1‑69 (MQ=255) cactttATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGa > 1:4876526/4‑63 (MQ=255) cAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:5261381/1‑59 (MQ=255) aaTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTc < 1:2953688/71‑1 (MQ=255) aTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGt < 1:4381462/49‑1 (MQ=255) aTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCa < 1:667106/71‑1 (MQ=255) tttATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc > 1:4966007/1‑63 (MQ=255) tataTGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGAGGCaaa > 1:2163919/1‑63 (MQ=255) tataTGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtg > 1:1443233/1‑71 (MQ=255) atatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCt < 1:2773216/41‑1 (MQ=255) atatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtgg > 1:3991974/1‑71 (MQ=255) tatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggt < 1:5645027/71‑1 (MQ=255) tatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggt < 1:4119257/71‑1 (MQ=255) atGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggtg > 1:1277146/1‑71 (MQ=255) tGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTc > 1:5444318/1‑43 (MQ=255) tGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggtg < 1:1991408/70‑1 (MQ=255) gatgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:2127078/1‑48 (MQ=255) gatgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGgtgtgt > 1:3009926/1‑71 (MQ=255) atgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAg > 1:1835171/1‑52 (MQ=255) gatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:1964015/1‑45 (MQ=255) attattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTCGTGTGTGAc > 1:416787/1‑70 (MQ=255) attattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTgg > 1:5287353/1‑47 (MQ=255) attattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTgg > 1:4554212/1‑47 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa < 1:1044524/40‑1 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:1820770/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:1234272/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:5496535/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:2698251/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:2205611/1‑52 (MQ=255) ttattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTg < 1:3561749/45‑1 (MQ=255) ttattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTg < 1:3937787/45‑1 (MQ=255) tattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa < 1:3648732/39‑1 (MQ=255) ttCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:2149397/1‑69 (MQ=255) ttCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATaa < 1:3577876/71‑1 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtg > 1:3078145/1‑56 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:1000203/1‑68 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:5002463/1‑68 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:3866388/1‑68 (MQ=255) tttGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCa < 1:1173437/50‑1 (MQ=255) ttGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg > 1:3220703/1‑37 (MQ=255) ttGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGgtgt > 1:422535/1‑56 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgt > 1:2665336/1‑50 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgt > 1:4966426/1‑50 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgt > 1:3778628/1‑50 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTa < 1:518456/70‑1 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTAt > 1:5344715/1‑71 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTAt > 1:2416517/1‑71 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAAAAGAGTAt > 1:4699726/1‑71 (MQ=255) gCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg < 1:2487863/35‑1 (MQ=255) aaGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGgtgtgt < 1:3225505/54‑1 (MQ=255) aaGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCgg > 1:3692972/1‑71 (MQ=255) aaGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCgg < 1:2293791/71‑1 (MQ=255) aGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGc < 1:5530268/71‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:4891607/36‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:1558451/36‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAg < 1:3053669/44‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGAc < 1:1005353/55‑1 (MQ=255) cTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAg > 1:2026998/1‑70 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:4540978/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:3528147/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:3378416/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:2877922/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:5600443/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:1570164/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:1160747/1‑71 (MQ=255) | ATCCCTCCTGTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGA > Exported/2919698‑2919838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |