| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 337,157 | C→A | 35.5% | intergenic (+129/+187) | ybaQ → / ← copA | predicted DNA‑binding transcriptional regulator/copper transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 337,157 | 0 | C | A | 35.5% | 93.0 / 45.1 | 59 | intergenic (+129/+187) | ybaQ/copA | predicted DNA‑binding transcriptional regulator/copper transporter |
| Reads supporting (aligned to +/- strand): ref base C (13/25); new base A (4/17); total (17/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.14e-01 | |||||||||||
CGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTAT > Exported/337088‑337226 | cgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGcc > 1:3645992/1‑71 (MQ=39) gCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGa > 1:2769352/1‑71 (MQ=255) gCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGa > 1:2203401/1‑71 (MQ=255) cACCGTTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt < 1:841036/71‑1 (MQ=255) cACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt < 1:4611801/71‑1 (MQ=255) cACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt < 1:3458981/71‑1 (MQ=255) aTTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt < 1:1673968/67‑1 (MQ=255) aTTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAgg > 1:3156300/1‑71 (MQ=255) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATaa > 1:1919618/1‑66 (MQ=255) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAg > 1:5474537/1‑67 (MQ=255) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAg > 1:3132075/1‑67 (MQ=255) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCg < 1:1366499/70‑1 (MQ=40) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGt > 1:1283872/1‑71 (MQ=39) aTGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt < 1:31433/59‑1 (MQ=255) cGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccg < 1:2408332/71‑1 (MQ=39) cGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcat < 1:1080292/71‑1 (MQ=39) cTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc < 1:277113/71‑1 (MQ=39) cTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc > 1:4314238/1‑71 (MQ=39) gcgcGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccgg < 1:709523/67‑1 (MQ=11) aCCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccgg > 1:2097000/1‑70 (MQ=40) tCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccggcag < 1:5343446/68‑2 (MQ=11) tCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGttt < 1:2583956/52‑1 (MQ=11) tCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgca < 1:4141989/60‑1 (MQ=35) cTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCg > 1:1829399/1‑48 (MQ=11) ttATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCg < 1:3592969/47‑1 (MQ=11) ttATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccgg < 1:712778/63‑1 (MQ=11) ttATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccgg < 1:4532308/63‑1 (MQ=11) ttATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccgg < 1:3746486/63‑1 (MQ=11) tATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGAt < 1:2194573/40‑1 (MQ=14) aTCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAgg < 1:1529795/43‑1 (MQ=14) aTCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAgg < 1:3865459/43‑1 (MQ=14) tCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGtt < 1:2441412/46‑1 (MQ=11) tCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGtt < 1:2434942/46‑1 (MQ=11) tCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGtt < 1:3298669/46‑1 (MQ=11) tCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgca < 1:2503124/55‑1 (MQ=11) tgCCTACAAACTTGTGCCTGAACGGTAGGACGGATaa > 1:295680/2‑37 (MQ=14) tgCCTACAAACTTGTGCCTGAACGGTAGGACGGATaa > 1:1375014/2‑37 (MQ=14) gCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCAtt > 1:123370/1‑71 (MQ=255) tACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGtt < 1:82049/39‑1 (MQ=14) tACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccggc < 1:3542284/54‑1 (MQ=11) tACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccggc < 1:4483043/54‑1 (MQ=11) tACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccggc < 1:5498161/54‑1 (MQ=11) tACAAACTTGTGCCTGAACCGTAGGCCGGATAAgg < 1:352773/35‑1 (MQ=40) tACAAACTTGTGCCTGAACCGTAGGCCGGATAAgg < 1:667819/35‑1 (MQ=40) tACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggcatccg < 1:3597628/59‑1 (MQ=255) tACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgca < 1:3936632/48‑1 (MQ=38) tACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgca < 1:18786/48‑1 (MQ=38) tACAAACTTGTGCCGGATCTGTAGGCCGGATAAGGCGTTTAtgccg < 1:3856010/46‑1 (MQ=11) tACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGtt < 1:1356805/39‑1 (MQ=14) tACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTAtgccg < 1:3556127/46‑1 (MQ=11) tACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTAtgccg < 1:2684260/46‑1 (MQ=11) cAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccggcag > 1:376778/1‑53 (MQ=11) cAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggca > 1:5661101/1‑53 (MQ=35) cAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCt < 1:2854365/70‑1 (MQ=255) cAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCt > 1:3725036/1‑70 (MQ=255) aCTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATg < 1:2371740/71‑1 (MQ=255) ttGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgca < 1:4301067/41‑1 (MQ=32) ccTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCt < 1:5197011/71‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTc > 1:3501097/1‑71 (MQ=39) gCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTAt < 1:4111953/71‑1 (MQ=39) | CGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTAT > Exported/337088‑337226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |