| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 132,232 | C→G | 22.2% | L175L (CTC→CTG) | yadD → | predicted transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 132,232 | 0 | C | G | 22.2% | 191.5 / 47.7 | 98 | L175L (CTC→CTG) | yadD | predicted transposase |
| Reads supporting (aligned to +/- strand): ref base C (32/44); new base G (14/7); total (46/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.26e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.48e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
CTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCAACTGGTCACGCTGA > Exported/132162‑132299 | tttCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATtctc > 1:648428/1‑70 (MQ=255) tCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGaa > 1:5084483/1‑71 (MQ=255) cccGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCg < 1:4883306/68‑1 (MQ=255) ccGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAac < 1:4287679/70‑1 (MQ=255) cGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAac < 1:3269773/69‑1 (MQ=255) cTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:5320433/1‑69 (MQ=255) cTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:1291540/1‑69 (MQ=255) gtggATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCa < 1:5028866/71‑1 (MQ=255) gATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaa < 1:2104096/71‑1 (MQ=255) gATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaa < 1:3186170/71‑1 (MQ=255) gATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaa < 1:5527922/70‑1 (MQ=255) atatCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaa < 1:2659004/70‑1 (MQ=255) taaCCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:3366443/3‑59 (MQ=255) tCACCATCGTACCTGACGATGAGATCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCa > 1:4331714/1‑70 (MQ=255) tCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:5194850/1‑59 (MQ=255) tCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:3654363/1‑59 (MQ=255) tCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:1715133/1‑59 (MQ=255) cACCATCGTACCTGACGATGAGATCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCata > 1:4456591/1‑71 (MQ=255) cACCATCGTACCTGACGATGAGATCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCat > 1:3151006/1‑70 (MQ=255) cACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACata > 1:137935/1‑71 (MQ=255) aCCATCGTACCTGACGATGAGATCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCata < 1:1682564/70‑1 (MQ=255) aCCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACatat < 1:5411175/71‑1 (MQ=255) aTCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCg < 1:4109234/71‑1 (MQ=255) tCACAGCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCg < 1:793773/48‑1 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta < 1:1364574/53‑1 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGc < 1:3733406/71‑1 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGc < 1:1990572/71‑1 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGc > 1:1724271/1‑71 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGc < 1:2811198/71‑1 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGAGGATTGCGATTCTCg < 1:3171776/48‑1 (MQ=255) cacaCCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGaa > 1:283599/1‑49 (MQ=255) cacaCCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGaa > 1:1119891/1‑49 (MQ=255) cacaCCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGaa > 1:2427586/1‑49 (MQ=255) cacaCCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGaa > 1:1469273/1‑49 (MQ=255) cacaCCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGa > 1:824333/1‑48 (MQ=255) acacCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGcc < 1:5225852/70‑1 (MQ=255) acacCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGcc < 1:1456262/70‑1 (MQ=255) acCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaa < 1:1591358/57‑1 (MQ=255) acCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaa < 1:4922131/57‑1 (MQ=255) cGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAgcgc > 1:5603944/1‑71 (MQ=255) cGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAgcgc < 1:1982600/71‑1 (MQ=255) cGGATGACGAAATCATGCAACATAGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAgcg > 1:4314735/1‑70 (MQ=255) ggATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACa < 1:4411448/57‑1 (MQ=255) ggATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACa < 1:5499548/57‑1 (MQ=255) aTGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaat < 1:1765041/52‑2 (MQ=255) tGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAac < 1:5469016/41‑1 (MQ=255) tGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAac < 1:3950972/41‑1 (MQ=255) tGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAac < 1:1419189/41‑1 (MQ=255) tGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAac < 1:2405323/41‑1 (MQ=255) tGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGc < 1:5480886/61‑1 (MQ=255) tGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACt < 1:5105414/71‑1 (MQ=255) aCGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACtt > 1:4311932/1‑70 (MQ=255) agaTCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGCGACCGCGATTTAAtc > 1:5264174/3‑70 (MQ=255) aaTCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGt < 1:4346016/71‑1 (MQ=255) aTCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGCGACcgcg < 1:1981471/61‑1 (MQ=255) aTCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGCGACCGCGATTTAAtcgg < 1:3144933/71‑4 (MQ=255) tCATGCAACATCGGCGTATAGCTCTGCTTGAACTGATTCAAAAGCATATTCGCGACCGCGat < 1:437409/62‑2 (MQ=255) tCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGCGACCGCGat < 1:3389478/62‑2 (MQ=255) tCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGCGACCGCGat < 1:5381492/62‑2 (MQ=255) tCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGCGACCGCGAttt < 1:4614380/64‑1 (MQ=255) tCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaaa < 1:5304759/44‑1 (MQ=255) tCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaaa < 1:2386059/44‑1 (MQ=255) tCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaaa < 1:3964826/44‑1 (MQ=255) cATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCata > 1:1096838/1‑47 (MQ=255) cATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCat > 1:3949494/1‑46 (MQ=255) cATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCat > 1:3643736/1‑46 (MQ=255) cATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCat > 1:3007904/1‑46 (MQ=255) cATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGCGACCGCGat > 1:2371657/1‑60 (MQ=255) cATGCAACATAGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGCGACCGCGat > 1:3248330/1‑60 (MQ=255) aTGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACa > 1:176267/1‑44 (MQ=255) tGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaa < 1:202621/39‑1 (MQ=255) gCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGcga > 1:2947347/1‑49 (MQ=255) cAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAgcg > 1:1678405/1‑53 (MQ=255) cAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCt > 1:1755295/1‑71 (MQ=255) cAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCt < 1:4014833/71‑1 (MQ=255) cAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCt > 1:121453/1‑71 (MQ=255) aaCATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGCGACCGCGATTTa > 1:2398642/1‑59 (MQ=255) aaCATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCATATTCGCGACCGCGATTTa > 1:2550432/1‑59 (MQ=255) aCATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAgcgc < 1:825848/52‑1 (MQ=255) aTCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTaa > 1:5389881/1‑57 (MQ=255) aTCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTaa > 1:4756399/1‑57 (MQ=255) aTCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAg > 1:3152257/1‑71 (MQ=255) cggcggATTGCGATTCTCGAACTACTGCAAAAACatat > 1:2487730/1‑38 (MQ=255) cggcggATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAAt > 1:4727016/1‑56 (MQ=255) cggcggATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAAt > 1:4733468/1‑56 (MQ=255) cggcggATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAAt > 1:5388259/1‑56 (MQ=255) ggcggATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCaa > 1:5025523/1‑71 (MQ=255) ggcggATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCaa > 1:549698/1‑71 (MQ=255) ggcggATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCaa < 1:1932043/71‑1 (MQ=255) ggcggATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCaa < 1:1726524/71‑1 (MQ=255) ggATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCAACt < 1:1854585/70‑1 (MQ=255) gATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCtt < 1:1957148/55‑1 (MQ=255) gATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCtt < 1:1875035/55‑1 (MQ=255) ttCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCAACTGGTCACGCt > 1:5450095/1‑70 (MQ=255) ttCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCAACTGGTCACGCTg < 1:2192961/71‑1 (MQ=255) tctcGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCAACTGGTCACGCTGa > 1:3072992/1‑71 (MQ=255) tctcGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCAACTGGTCACGCTGa > 1:1205416/1‑71 (MQ=255) ctcGAACTACTGCAAAAACATATTCGCCAGCGCGACTTaa > 1:1582883/1‑40 (MQ=255) ctcGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCaa > 1:3476834/1‑57 (MQ=255) ctcGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCaa > 1:4439828/1‑57 (MQ=255) | CTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCCAGCGCGACTTAATGTTATTGCTTGAGCAACTGGTCACGCTGA > Exported/132162‑132299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |