| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 539,419 | C→T | 8.9% | G137D (GGC→GAC) | dps ← | Fe‑binding and storage protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 539,419 | 0 | C | T | 8.9% | 220.3 / 9.0 | 78 | G137D (GGC→GAC) | dps | Fe‑binding and storage protein |
| Reads supporting (aligned to +/- strand): ref base C (45/26); new base T (5/2); total (50/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGGAATTTATCCAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGTGATCCTGA > Exported/539352‑539487 | caGGAATTTATCCAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCaa > 1:4555206/1‑71 (MQ=255) aGGAATTTATCCAGGTCGCGAGACGCGGCGGTCAGGATATCTTCGGTGTCGTCATCTTTCGCTTCGCCAAt < 1:2582910/71‑1 (MQ=255) gAATTTATCCAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCaa < 1:3030321/68‑1 (MQ=255) aTTTATCCAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGc < 1:3109696/70‑1 (MQ=255) tttATCCAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGc < 1:3896860/69‑1 (MQ=255) ttATCCAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCttt > 1:923255/1‑71 (MQ=255) tATCCAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTg > 1:5672726/1‑71 (MQ=255) aTCCAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTg < 1:910395/70‑1 (MQ=255) tCCAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCg > 1:2403753/1‑71 (MQ=255) ccAGGTCGCGAGCCGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCg > 1:1132617/1‑70 (MQ=255) ccAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCg > 1:726002/1‑70 (MQ=255) ccAGGTCGCGAGACGCGGCGGTCAGGATATCTGAGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTg < 1:2506458/68‑1 (MQ=255) ggTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCtt > 1:1474810/1‑63 (MQ=255) ggTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCtt > 1:2639569/1‑63 (MQ=255) gTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGt > 1:3313902/1‑71 (MQ=255) tCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGc < 1:2600665/59‑1 (MQ=255) gcgAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGTCAATCGCTTTGCGTACGTCAt > 1:3107115/1‑71 (MQ=255) gcgAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGTCAATCGCTTTGCGTACGTCAt > 1:5066006/1‑71 (MQ=255) gcgAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGTCAATCGCTTTGCGTACGTCAt > 1:2234694/1‑71 (MQ=255) gcgAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGTCAATCGCTTTGCGTACGTCAt > 1:510868/1‑71 (MQ=255) gcgAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGTCAATCGCGTTGCGTACGTCAt > 1:2384356/1‑71 (MQ=255) agaCGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCg < 1:535143/53‑1 (MQ=255) agaCGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCg < 1:135166/53‑1 (MQ=255) agaCGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTAc > 1:1579285/1‑63 (MQ=255) agaCGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTAc > 1:4175540/1‑63 (MQ=255) aCGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGc > 1:2403680/1‑70 (MQ=255) cggcggTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGcga > 1:1428012/1‑69 (MQ=255) gcggTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGcgacga < 1:3637281/70‑1 (MQ=255) ggTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTTCGTCATTAGCGACGATTg < 1:4727389/71‑1 (MQ=255) tCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCg < 1:3983064/71‑1 (MQ=255) atatCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGt > 1:2721352/1‑49 (MQ=255) atatCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTCTGCGTACGTCATTAGCGACGATTGCGTAACg > 1:2374323/1‑71 (MQ=255) tatCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACgg > 1:4666363/1‑71 (MQ=255) tatCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACgg > 1:4850918/1‑71 (MQ=255) tatCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACgg > 1:4935569/1‑71 (MQ=255) atCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGt > 1:3819150/1‑71 (MQ=255) atCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGt > 1:368412/1‑71 (MQ=255) tCTGCGGTGTCGTCATCTTTCGCTTCGTCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGt < 1:3032657/70‑1 (MQ=255) tCTGCGGTGTCGTCATCTTTCGCTTCGTCAATCGCTTTGCGTACGGCATTAGCGACGATTGCGTAACGGt < 1:4928398/70‑1 (MQ=255) tCTGCGGTGTCGTCATCTTTCCCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTaa > 1:35681/1‑66 (MQ=255) cTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAg > 1:3917455/1‑51 (MQ=255) cTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAg > 1:5309912/1‑51 (MQ=255) cTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAg > 1:1141421/1‑51 (MQ=255) cTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGt > 1:3809052/1‑69 (MQ=255) tGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCac > 1:1157685/1‑70 (MQ=255) tGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAg > 1:1037903/1‑71 (MQ=255) cGGTGTCGTCTTCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGcc < 1:5540718/71‑1 (MQ=255) cGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGc > 1:5133631/1‑70 (MQ=255) cGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGc < 1:3153749/70‑1 (MQ=255) gtgtCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGt < 1:1455351/58‑1 (MQ=255) gtgtCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAg > 1:3087210/1‑71 (MQ=255) gtgtCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAg < 1:921659/71‑1 (MQ=255) gtgtCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAg < 1:928229/71‑1 (MQ=255) tgtCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGt < 1:4299581/71‑1 (MQ=255) tcgtcATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGtt < 1:3286185/70‑1 (MQ=255) tcgtcATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTc > 1:2649588/1‑71 (MQ=255) gtcATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCtt < 1:5385388/71‑1 (MQ=255) gtcATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCtt < 1:3646846/71‑1 (MQ=255) gtcATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCtt < 1:142928/71‑1 (MQ=255) gtcATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCtt > 1:5567584/1‑71 (MQ=255) tcATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCttt > 1:2355326/1‑71 (MQ=255) tcATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCtt > 1:1465695/1‑70 (MQ=255) cATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCttt > 1:2341403/1‑70 (MQ=255) cATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCttt > 1:3973680/1‑70 (MQ=255) cATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCttt > 1:1238619/1‑70 (MQ=255) tCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCttt > 1:90834/1‑68 (MQ=255) tCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCttt > 1:1528452/1‑68 (MQ=255) tCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCtt > 1:740076/1‑67 (MQ=255) cTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGAt > 1:2241399/1‑43 (MQ=255) cTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCa < 1:3843081/56‑1 (MQ=255) tttCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTc < 1:2281582/63‑1 (MQ=255) tttCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTc < 1:5358780/63‑1 (MQ=255) tttCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTc < 1:3426584/63‑1 (MQ=255) tttCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCa > 1:884569/1‑68 (MQ=255) tttCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCa > 1:4504769/1‑68 (MQ=255) tttCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGt > 1:3043762/1‑71 (MQ=255) tttCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGt > 1:2587037/1‑71 (MQ=255) tttCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGt > 1:681726/1‑71 (MQ=255) ttcgcttcgcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAgg > 1:3478876/1‑69 (MQ=255) ttcgcttcgcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGt > 1:5284840/1‑70 (MQ=255) tcgcttcgcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAg < 1:3708682/67‑1 (MQ=255) tcgcttcgcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGTGa > 1:2970097/1‑71 (MQ=255) gcttcgcCAATCGCTTTGCGTACGTCATTAGcgacg < 1:5155492/36‑1 (MQ=255) gcttcgcCAATCGCTTTGCGTACGTCATTAGcgacg < 1:3776566/36‑1 (MQ=255) gcttcgcCAATCGCTTTGCGTACGTCATTAGcgacg < 1:2775001/36‑1 (MQ=255) gcttcgcCAATCGCTTTGCGTACGTCATTAGcgacg < 1:956576/36‑1 (MQ=255) gcttcgcCAATCGCTTTGCGTACGTCATTAGcgacg < 1:1697647/36‑1 (MQ=255) tcgcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAg > 1:1038302/1‑62 (MQ=255) tcgcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGTGATCCt > 1:4647167/1‑70 (MQ=255) tcgcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGTGATCCt > 1:3633177/1‑70 (MQ=255) cgcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGTGATCCTg > 1:5687749/1‑70 (MQ=255) cgcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGTGATCCTg > 1:5153330/1‑70 (MQ=255) cgcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGTGATCCTg < 1:1836150/70‑1 (MQ=255) gcCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGTGATCCTGa < 1:3577016/70‑1 (MQ=255) | CAGGAATTTATCCAGGTCGCGAGACGCGGCGGTCAGGATATCTGCGGTGTCGTCATCTTTCGCTTCGCCAATCGCTTTGCGTACGTCATTAGCGACGATTGCGTAACGGTCAGCCAGTTCTTTCAGGTGATCCTGA > Exported/539352‑539487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |