BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	Exported	608,037	A→G	12.2%	R739R (CGT→CGC)	pflB ←	pyruvate formate lyase I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	Exported	608,037	0	A	G	12.2%	207.0 / 17.0	82	R739R (CGT→CGC)	pflB	pyruvate formate lyase I
Reads supporting (aligned to +/- strand): ref base A (43/29); new base G (4/6); total (47/35)
Fisher's exact test for biased strand distribution p-value = 3.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.05e-01

CTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCGCGTCGAGCA  >  Exported/607967‑608107

cTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGaaa                                                                        >  1:982748/1‑71 (MQ=255)

cTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGaaa                                                                        >  1:2170650/1‑71 (MQ=255)

cTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGaaa                                                                        >  1:4477486/1‑71 (MQ=255)

   aTTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGaaa                                                                        <  1:4419698/68‑1 (MQ=255)

   aTTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACg                                                                      <  1:1962975/70‑1 (MQ=255)

   aTTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACg                                                                      >  1:2298041/1‑70 (MQ=255)

   aTTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGt                                                                     <  1:3026259/71‑1 (MQ=255)

    ttACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGt                                                                     >  1:4396549/1‑70 (MQ=255)

    ttACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTa                                                                    >  1:2300988/1‑71 (MQ=255)

    ttACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGATGCT‑GTTCTTTAGTCAGCGAGTTGAAACGt                                                                     >  1:3494523/1‑70 (MQ=255)

       cATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACt                                                                  <  1:4815956/70‑1 (MQ=255)

         tAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGGCAGCGAGTTGAAACGTACTGc                                                                <  1:3749529/70‑1 (MQ=255)

          aGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCg                                                               >  1:3536577/1‑70 (MQ=255)

             ttGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGc                                                           <  1:2617571/71‑1 (MQ=255)

              tGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACg                                                                      >  1:1801633/1‑59 (MQ=255)

              tGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACg                                                                      >  1:1953076/1‑59 (MQ=255)

               gAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGAGAGTTGAAACGTACTGCGTAGcc                                                          <  1:83408/70‑1 (MQ=255)

                 gtaaaGGTACGTGAAATAACATCCTGTTGCT‑GTTCACGGGTCAGTGCGTTGAAGCGCACGGCGTAGCCAGa                                                       <  1:350587/68‑1 (MQ=255)

                  tGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGt                                                                     <  1:1294776/56‑1 (MQ=255)

                    aaGGTACGTGAAATAACATCCTGTTGCT‑GTTCACGGGTCAGTGCGTTGAAGCGCACGGCGTAGCCAGaga                                                     <  1:2969174/70‑3 (MQ=255)

                    aaGGTACGTGAAATAACATCCTGTTGCT‑GTTCACGGGTCAGTGCGTTGAAGCGCACGGCGTAGCCAGaga                                                     <  1:404675/70‑3 (MQ=255)

                    aaGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATa                                                     >  1:227011/1‑70 (MQ=255)

                    aaGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATa                                                     >  1:5315911/1‑70 (MQ=255)

                     aGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACg                                                                      >  1:805418/1‑52 (MQ=255)

                     aGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACg                                                                      >  1:5010636/1‑52 (MQ=255)

                        tACGTGAAATAACATCCTGTTGCT‑GTTCACGGGTCAGTGCGTTGAAGCGCACGGCGTAGCCAGAGacac                                                  >  1:3279435/1‑69 (MQ=255)

                        tACGTGAAATAACATCCTGTTGCT‑GTTCACGGGTCAGTGCGTTGAAGCGCACGGCGTAGCCAGAGACACg                                                 >  1:398507/1‑70 (MQ=255)

                            aGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACTGATgg                                            <  1:87811/71‑1 (MQ=255)

                            aGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATgg                                            <  1:3814349/71‑1 (MQ=255)

                              taataaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACgg                                                <  1:5158368/65‑1 (MQ=255)

                              taataaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACgg                                                <  1:3326983/65‑1 (MQ=255)

                              taataaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACg                                                 <  1:366473/64‑1 (MQ=255)

                               aataaCATCCTGTTGCT‑GTTCACGGGTCAGTGCGTTGAAGCGCACGGCGTAGCCAGAGACACGCATTGTCa                                         <  1:569736/71‑1 (MQ=255)

                                ataaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGAt                                              >  1:531529/1‑65 (MQ=255)

                                ataaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGAt                                              >  1:2715948/1‑65 (MQ=255)

                                ataaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGAt                                              >  1:5538430/1‑65 (MQ=255)

                                ataaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGAt                                              >  1:3593189/1‑65 (MQ=255)

                                ataaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAg                                        <  1:472346/71‑1 (MQ=255)

                                ataaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAg                                        >  1:1064665/1‑71 (MQ=255)

                                ataaCATCCTGTTGCT‑GTTCACGGGTCAGTGCGTTGAAGCGCACGGCGTAGCCAGAGACACGGATTGTCAg                                        >  1:4040379/1‑71 (MQ=255)

                                 taaCATCCTGTTGCT‑GTTCACGGGTCAGTGCGTTGAAGCGCACGGCGTAGCCAGAGACACGGATTGTCa                                         <  1:3450180/69‑1 (MQ=255)

                                  aaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTa                                                                    >  1:3235411/1‑41 (MQ=255)

                                  aaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTa                                                                    >  1:2849456/1‑41 (MQ=255)

                                  aaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTa                                                                    >  1:739180/1‑41 (MQ=255)

                                  aaCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAg                                                            <  1:1961296/49‑1 (MQ=255)

                                   aCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGt                                                              >  1:1115134/1‑46 (MQ=255)

                                   aCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACgg                                                >  1:2975706/1‑60 (MQ=255)

                                   aCGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCa                                         >  1:2340301/1‑67 (MQ=255)

                                     gTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCg                                   >  1:3563115/1‑71 (MQ=255)

                                     gTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCg                                   >  1:5527442/1‑71 (MQ=255)

                                      tCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGt                                           <  1:5225139/62‑1 (MQ=255)

                                       ccTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTAc                                                                   >  1:2986568/1‑37 (MQ=255)

                                        ctgctgct‑gTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCa                                         >  1:753132/1‑62 (MQ=255)

                                        ctgctgct‑gTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGa                                 >  1:2966344/1‑70 (MQ=255)

                                        ctgctgct‑gTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGa                                 >  1:3375138/1‑70 (MQ=255)

                                        ctgctgct‑gTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGa                                 >  1:1178530/1‑70 (MQ=255)

                                        ctgctgca‑gTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGa                                 >  1:562899/1‑70 (MQ=255)

                                         tgctgct‑gTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCt                                      <  1:1232043/64‑1 (MQ=255)

                                           ctgctgGTTCTTTAGTCAGCGAGTTGAAACGTACTGc                                                                >  1:4867945/1‑37 (MQ=38)

                                              ct‑gTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGcc                                                          <  1:1052531/39‑1 (MQ=255)

                                              ct‑gTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATAttttt                          <  1:1119205/71‑1 (MQ=255)

                                                  ttCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTcc                        <  1:1488244/70‑1 (MQ=255)

                                                   tCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCgg                      >  1:2144533/1‑71 (MQ=255)

                                                   tCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCgg                      >  1:5385737/1‑71 (MQ=255)

                                                   tCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCgg                      >  1:3291109/1‑71 (MQ=255)

                                                    cTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGa                                                       >  1:5045808/1‑37 (MQ=255)

                                                    cTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGa                                                       >  1:4501310/1‑37 (MQ=255)

                                                    cTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATa                                                     >  1:2000940/1‑39 (MQ=255)

                                                    cTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATa                                                     >  1:2851405/1‑39 (MQ=255)

                                                    cTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAg                                        >  1:4205704/1‑52 (MQ=255)

                                                        aGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATAttttt                          <  1:5332446/62‑1 (MQ=255)

                                                         gTCAGTGCGTTGAAGCGCACGGCGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCgg                      >  1:3904211/1‑65 (MQ=9)

                                                         gTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTc                >  1:4713787/1‑71 (MQ=255)

                                                         gTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTc                <  1:2381112/71‑1 (MQ=255)

                                                          tCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTcc               <  1:1067665/71‑1 (MQ=255)

                                                          tCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTcc               <  1:4341197/71‑1 (MQ=255)

                                                            aGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGtt                   <  1:5478999/65‑1 (MQ=255)

                                                            aGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGtt                   <  1:862411/65‑1 (MQ=255)

                                                            aGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCAt             >  1:4465790/1‑71 (MQ=255)

                                                             gCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGt                                           <  1:2426693/40‑1 (MQ=255)

                                                              cGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATcg           >  1:2599153/1‑71 (MQ=255)

                                                                cgTTGAAGCGCACGGCGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTcc                        <  1:5500462/55‑1 (MQ=12)

                                                                  ttGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTc                         <  1:1169838/53‑1 (MQ=255)

                                                                  ttGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTc                         <  1:1855915/53‑1 (MQ=255)

                                                                    gAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCa              >  1:3090896/1‑62 (MQ=255)

                                                                    gAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCGCGTCg      <  1:1841906/70‑1 (MQ=255)

                                                                      aaCGTACTGCGTAGCCAGATACAGGGATGGTCAGCTGCGGATATTTTTcc                        <  1:4784597/50‑1 (MQ=255)

                                                                       aCGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCGCGTCGagca  <  1:2574704/71‑1 (MQ=255)

                                                                       aCGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCGCGTCGag    >  1:4723853/1‑69 (MQ=255)

CTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCT‑GTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCGCGTCGAGCA  >  Exported/607967‑608107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`