Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	Exported	608,658	A→C	6.9%	V532V (GTT→GTG)	pflB ←	pyruvate formate lyase I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	Exported	608,658	0	A	C	6.9%	220.9 / 8.5	88	V532V (GTT→GTG)	pflB	pyruvate formate lyase I
Reads supporting (aligned to +/- strand):  ref base A (42/39);  new base C (2/4);  total (45/43)
Fisher's exact test for biased strand distribution p-value = 4.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01

CCAGACCGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCA  >  Exported/608591‑608722                                                                    |                                                                 ccAGACCGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACg                                                               <  1:827431/71‑1 (MQ=255)  cAGACCGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCaa                                                                 >  1:4241703/1‑68 (MQ=255)   aGACCGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGa                                                             >  1:4964313/1‑71 (MQ=255)    gACCGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGa                                                             >  1:2606141/1‑70 (MQ=255)      ccGTTTTCGTCACGGATTGGTTTCACGCGGGCATATTTGATGGCAGACAGGGAGTCCGTCGCCACCGACAg                                                          <  1:3184799/71‑1 (MQ=255)       cGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACa                                                           >  1:5132053/1‑69 (MQ=255)       cGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGa                                                         <  1:4881319/71‑1 (MQ=255)           ttCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAg                                                     >  1:2221473/1‑71 (MQ=255)           ttCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAg                                                     >  1:5559560/1‑71 (MQ=255)             cGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGc                                                    <  1:5559538/70‑1 (MQ=255)             cGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGc                                                    <  1:525254/70‑1 (MQ=255)             cGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGc                                                    <  1:829012/70‑1 (MQ=255)              gTCACGGATTGGTTTCACGCGGGCATATTTGATGGCAGACAGGGAGTCCGTCGCCACCGACAGGCCCGc                                                    <  1:5654942/69‑1 (MQ=255)               tCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGAt                                                 <  1:4089282/71‑1 (MQ=255)                 aCGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATaa                                               >  1:4233397/1‑70 (MQ=255)                 aCGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATAc                                               >  1:1333560/1‑71 (MQ=255)                   gAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACg                                                               <  1:914416/53‑1 (MQ=255)                   gAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACca                                             <  1:463864/71‑1 (MQ=255)                   gAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACca                                             <  1:2480866/71‑1 (MQ=255)                   gAATCGATTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGAc                                                            <  1:4183711/56‑1 (MQ=255)                     aTCGGTTTAACTTTCGCATATTTTATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACcaca                                           <  1:3384186/71‑1 (MQ=255)                     aTCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACcaca                                           <  1:2769197/71‑1 (MQ=255)                      tCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCacac                                          >  1:5277265/1‑71 (MQ=255)                         gTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGcc                                       <  1:1521978/71‑1 (MQ=255)                         gTTAAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGc                                        <  1:3387994/70‑1 (MQ=255)                           ttAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCAt                                     >  1:5109093/1‑71 (MQ=255)                            tAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATg                                    >  1:115620/1‑71 (MQ=255)                            tAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATg                                    >  1:5075723/1‑71 (MQ=255)                            tAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATg                                    >  1:3085328/1‑71 (MQ=255)                             aaCTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATg                                    >  1:2842431/1‑70 (MQ=255)                               cTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCa                                                      <  1:4423978/50‑1 (MQ=255)                               cTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCa                                                      <  1:4223321/50‑1 (MQ=255)                               cTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCa                                                      <  1:38620/50‑1 (MQ=255)                               cTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCa                                                      <  1:758341/50‑1 (MQ=255)                               cTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTg                                 <  1:117589/71‑1 (MQ=255)                                tttCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGc                                >  1:2713393/1‑71 (MQ=255)                                 ttCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTg                                 >  1:5359604/1‑69 (MQ=255)                                 ttCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCg                               >  1:4107728/1‑71 (MQ=255)                                  tCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGc                                <  1:2585078/69‑1 (MQ=255)                                  tCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGc                                <  1:2390300/69‑1 (MQ=255)                                  gggCATATTTGATGGCAGACAGGGAGTCCGTCGCCACCGACAGGCCCGCGATGCCGCATGCCATAGTGCga                              <  1:373464/69‑2 (MQ=255)                                   cGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATgg                                   >  1:1824049/1‑65 (MQ=255)                                   cGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATgg                                   >  1:1881742/1‑65 (MQ=255)                                    gCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGAt                            <  1:937516/71‑1 (MQ=255)                                     cttatTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATa                           <  1:2431491/69‑1 (MQ=255)                                     cATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATa                           <  1:920176/71‑1 (MQ=255)                                     cATATTTGATGGCAGACAGGGAGTCCGTCGCCACCGACAGGCCCGCGa                                                  >  1:1089330/1‑48 (MQ=255)                                       tatTTGATTGCAGACAGGGAGTCAGCAGCAACGGACa                                                           <  1:3466546/37‑1 (MQ=255)                                       tatTTGATTGCAGACAGGGAGTCAGCAGCAACGGACa                                                           <  1:4210037/37‑1 (MQ=255)                                       tatTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGAt                                                 <  1:1127564/47‑1 (MQ=255)                                       tatTTGATGGCAGACAGGGAGTCCGTCGCCACCGACAGGcccg                                                     <  1:1613128/43‑3 (MQ=12)                                        atTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGc                                                    <  1:574690/43‑1 (MQ=255)                                        atTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACg                        >  1:1149481/1‑71 (MQ=255)                                         tttGATTGCAGACAGGGAGTCAGCAGCAACGGACAg                                                          >  1:3417255/1‑36 (MQ=255)                                         tttGATTGCAGACAGGGAGTCAGCAGCAACGGACAg                                                          >  1:1767876/1‑36 (MQ=255)                                         tttGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGa                                                  <  1:218253/44‑1 (MQ=255)                                         tttGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGt                       >  1:3464094/1‑71 (MQ=255)                                         tttGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGt                       >  1:4624953/1‑71 (MQ=255)                                         tttGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGt                       >  1:4120457/1‑71 (MQ=255)                                         tttGATGGCAGACAGGGAGTCCGTCGCCACCGACAGGCCCGc                                                    >  1:1975401/1‑42 (MQ=255)                                          ttGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGt                       >  1:3549713/1‑70 (MQ=255)                                          ttGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGt                       >  1:4482926/1‑70 (MQ=255)                                           tGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTc                      <  1:4495706/70‑1 (MQ=255)                                           tGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACACCATGGTGCGGATAACGTCa                     >  1:1826472/1‑71 (MQ=255)                                              ttGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACgg                  <  1:709857/71‑1 (MQ=255)                                               tGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGt                 >  1:3881570/1‑71 (MQ=255)                                                gCAGACAGGGAGTCAGCAGCGACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTc                >  1:1409918/1‑71 (MQ=255)                                                gCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATaa                          >  1:2960014/1‑61 (MQ=255)                                                gCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATaa                          >  1:5666001/1‑61 (MQ=255)                                                gCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTc                >  1:4431275/1‑71 (MQ=255)                                                gCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTc                >  1:5365467/1‑71 (MQ=255)                                                gCAGACAGGGAGTCAGCAGCAACGGACAGAACAGCGATACCACACGCCATGGTGCGGATaa                          >  1:898897/1‑61 (MQ=255)                                                 cAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTc                <  1:70206/70‑1 (MQ=255)                                                 cAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCg               >  1:3893114/1‑71 (MQ=255)                                                   gACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCgcg             <  1:994016/71‑3 (MQ=255)                                                   gACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTg             <  1:2664318/71‑1 (MQ=255)                                                    aCAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTg             >  1:4380746/1‑70 (MQ=255)                                                    aCAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGc            <  1:259841/71‑1 (MQ=255)                                                     cAGGGAGTCAGCAGCACCGGACAGACCAGCGATACcaca                                           >  1:4979632/1‑39 (MQ=255)                                                     cAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGc            <  1:5063168/70‑1 (MQ=255)                                                     cAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCa           <  1:2870297/71‑1 (MQ=255)                                                      aGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAg          >  1:4929491/1‑71 (MQ=255)                                                        ggAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCa           >  1:767944/1‑68 (MQ=255)                                                        ggAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCa           >  1:4325930/1‑68 (MQ=255)                                                            tCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCAt    <  1:5488704/71‑1 (MQ=255)                                                              agcagcAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAg          >  1:4966893/1‑63 (MQ=255)                                                              agcagcAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCAt    >  1:2339797/1‑69 (MQ=255)                                                              agcagcAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCAt    >  1:3859894/1‑69 (MQ=255)                                                              agcagcAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCa  <  1:5218487/71‑1 (MQ=255)                                                                   caACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAAc                         <  1:1283199/43‑1 (MQ=255)                                                                    aaCGGACAGACCAGCGATACCACACGCCATGGTGCGGATAAc                         <  1:1612146/42‑1 (MQ=255)                                                                    |                                                                 CCAGACCGTCTTCGTCACGAATCGGTTTAACTTTCGCATATTTGATTGCAGACAGGGAGTCAGCAGCAACGGACAGACCAGCGATACCACACGCCATGGTGCGGATAACGTCACGGTCGTGCAGCGCCATCA  >  Exported/608591‑608722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑