Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	Exported	609,282	G→A	6.2%	Y324Y (TAC→TAT) ‡	pflB ←	pyruvate formate lyase I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	Exported	609,282	0	G	A	6.2%	287.6 / 6.0	96	Y324Y (TAC→TAT) ‡	pflB	pyruvate formate lyase I
Reads supporting (aligned to +/- strand):  ref base G (60/30);  new base A (4/2);  total (64/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

TACGACCGTCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAGGTGGTCAACCATTTCCTGCGCTT  >  Exported/609212‑609352                                                                       |                                                                       tACGACCGTCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCg                                                                        <  1:3889893/71‑1 (MQ=255) tACGACCGTCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCg                                                                        <  1:2079290/71‑1 (MQ=255)     aCCGTCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTAtt                                                                    >  1:1698968/1‑71 (MQ=255)     aCCGTCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTAt                                                                     >  1:624818/1‑70 (MQ=255)      ccGTCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTc                                                                   >  1:4124624/1‑71 (MQ=255)      ccGTCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTc                                                                   >  1:572776/1‑71 (MQ=255)        gTCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCg                                                                 <  1:850734/71‑1 (MQ=255)        gTCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCg                                                                 <  1:1691527/71‑1 (MQ=255)         tCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCg                                                                 >  1:4205076/1‑70 (MQ=255)            aGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAg                                                              >  1:4514107/1‑70 (MQ=255)                ccATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTGCGGAGTACg                                                          >  1:3484677/1‑70 (MQ=255)                  aTACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAg                                                       >  1:4629968/1‑71 (MQ=255)                   tACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAgg                                                      <  1:1712763/71‑1 (MQ=255)                   tACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAgg                                                      <  1:3820930/71‑1 (MQ=255)                     ccaccGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGa                                                     <  1:821195/70‑1 (MQ=255)                     ccaccGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGa                                                     <  1:3361070/70‑1 (MQ=255)                       accGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCg                                                                 >  1:378396/1‑56 (MQ=255)                        ccGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTc                                                                   >  1:5616054/1‑53 (MQ=255)                         cGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCg                                                 <  1:1657633/70‑1 (MQ=255)                           aTAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAAc                                              >  1:4952182/1‑71 (MQ=255)                            tAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTc                                                                   <  1:4114301/49‑1 (MQ=255)                            tAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGa                                                <  1:2988351/68‑1 (MQ=255)                             aGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGc                                                  >  1:1460356/1‑65 (MQ=255)                             aGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAAcc                                             >  1:5282517/1‑70 (MQ=255)                             aGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAAc                                              >  1:4756260/1‑69 (MQ=255)                             aGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCa                                            >  1:399609/1‑71 (MQ=255)                              gATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCa                                            <  1:4702818/70‑1 (MQ=255)                              acttCCGTCGCCCAGATTGGGTCGCCGGAGAACAGCGAATCAAATTCCGGTGTACGCAGGAAGCGTACCa                                            >  1:5649674/3‑70 (MQ=255)                                  cGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACg                                        >  1:4007674/1‑70 (MQ=255)                                       gCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGtt                                   >  1:1803539/1‑70 (MQ=255)                                        cccAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTc                                 <  1:5186223/71‑1 (MQ=255)                                        cccAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTc                                 <  1:3545860/71‑1 (MQ=255)                                         ccAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCa                                >  1:3512965/1‑71 (MQ=255)                                          cAGATTGGGTCGCCGGAGAACAGCGAATCAAATTCCGGTGTACGCAGGAAGCGTACCATACGGATCTTCAt                               <  1:3130415/71‑1 (MQ=255)                                          cAGATTGGGTCGCCGGAGAACAGCGAATCAAATTCCGGTGTACGCAGGAAGCGTACCATACGGATCTTCAt                               <  1:2266684/71‑1 (MQ=255)                                          cAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCg                                                 <  1:42153/53‑1 (MQ=255)                                          cAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCg                                                 <  1:4897229/53‑1 (MQ=255)                                          cAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCg                                                 <  1:3613448/53‑1 (MQ=255)                                           aGATTGGGTCGCCGGAGAACAGCGAATCAAATTCCGGTGTACGCAGGAAGCGTACCATACGGATCTTCAt                               >  1:3455217/1‑70 (MQ=255)                                           aGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCAt                               >  1:123839/1‑70 (MQ=255)                                           aGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCAt                               >  1:4891136/1‑70 (MQ=255)                                           aGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCAt                               >  1:3794498/1‑70 (MQ=255)                                           aGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCAt                               >  1:3589419/1‑70 (MQ=255)                                           aGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCAt                               >  1:2193704/1‑70 (MQ=255)                                           aGATCGGGTCGCCAGAGAACAGTTCATCGTATTACGGAGTACGCAGGAAGCGAACCATACGCAGTTTCAt                               >  1:4897799/1‑70 (MQ=255)                                            gATTGGGTCGCCGGAGAACAGCGAATCAAATTCCGGTGTACGCAGGAAGCGTACCATACGGATCTTCATGa                             >  1:3407185/1‑71 (MQ=255)                                            gATCGGGTCGCCAGAGAACAGTTCATCGTATTTCGGAGTACGCAGGAAGCGa                                                >  1:190192/1‑52 (MQ=255)                                            gATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGc                                                         <  1:2008814/43‑1 (MQ=255)                                            gATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGaa                                               >  1:2798119/1‑53 (MQ=255)                                            gATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGaa                                               >  1:4145257/1‑53 (MQ=255)                                            gATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGaa                                               >  1:5165173/1‑53 (MQ=255)                                             aTCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGa                                                               >  1:5447180/1‑36 (MQ=255)                                             aTCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGa                                                               >  1:440374/1‑36 (MQ=255)                                             aTCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGAc                            <  1:3607582/71‑1 (MQ=255)                                              ttgggTCGCCGGAGAACAGCGAATCAAATTCCGGTGTACGCAGGAAGCGTACCATACGGATCTTCATGa                             >  1:1024587/3‑69 (MQ=255)                                              tCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCa                                                        >  1:352507/1‑42 (MQ=255)                                              tCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGa                                                >  1:1816350/1‑50 (MQ=255)                                              tCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATa                                          >  1:23699/1‑56 (MQ=255)                                              tCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATa                                          >  1:3601350/1‑56 (MQ=255)                                              tCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGAcc                           <  1:3888221/71‑1 (MQ=255)                                               cGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAAcc                                             >  1:2447193/1‑52 (MQ=255)                                               cGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAAcc                                             >  1:5177806/1‑52 (MQ=255)                                               cGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAAcc                                             >  1:5637492/1‑52 (MQ=255)                                               cGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAAcc                                             >  1:3362506/1‑52 (MQ=255)                                               cGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGttt                                  >  1:722803/1‑63 (MQ=255)                                               cGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCa                                >  1:5626028/1‑65 (MQ=255)                                               cGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGAcc                           <  1:2468755/70‑1 (MQ=255)                                               cGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGAcc                           <  1:5527717/70‑1 (MQ=255)                                               cGGGTCGCCAGAGAACAGTTCATCGTATTACGGAGTACGCAGGAAGCg                                                 >  1:5453611/1‑48 (MQ=255)                                                 ggTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCa                                            <  1:2814762/51‑1 (MQ=255)                                                    cGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAggtg                      >  1:4023666/1‑70 (MQ=255)                                                     gCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCg                                                 >  1:3567643/1‑42 (MQ=255)                                                     gCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGAc                            >  1:4516847/1‑63 (MQ=255)                                                     gCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAggtggt                    >  1:5303577/1‑71 (MQ=255)                                                     gCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAggtggt                    >  1:3271539/1‑71 (MQ=255)                                                       cAGAGAACAGTTCATCGTATTCCTGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAGGTGGTCa                  <  1:5031927/71‑1 (MQ=255)                                                       cAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGt                                    <  1:228596/53‑1 (MQ=255)                                                       cAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAGGTGGTCa                  <  1:278814/71‑1 (MQ=255)                                                        agagAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAg                         >  1:1972603/1‑63 (MQ=255)                                                         gagaACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATa                                          <  1:4348556/45‑1 (MQ=255)                                                         gagaACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCACCTGGTCat                 >  1:878281/1‑69 (MQ=255)                                                         gagaACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCACCTGGTCat                 >  1:2931471/1‑69 (MQ=255)                                                           gaACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAGGTGGTCAACCa              <  1:1885619/71‑1 (MQ=255)                                                             aCAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGCTTCATGACCAGGTGGTCAACCAtt            >  1:1719359/1‑71 (MQ=255)                                                             aCAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGAAGTTTCATGACCAGGTGGTCAACCAtt            >  1:4089161/1‑71 (MQ=255)                                                              cAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAGGTGGTCAACCAtt            >  1:2999037/1‑70 (MQ=255)                                                                 ttCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGttt                                  <  1:4537443/45‑1 (MQ=255)                                                                 ttCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGttt                                  <  1:4923374/45‑1 (MQ=255)                                                                 ttCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGttt                                  <  1:2220146/45‑1 (MQ=255)                                                                 ttCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGttt                                  <  1:64744/45‑1 (MQ=255)                                                                  tCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAg                                     >  1:2543439/1‑41 (MQ=255)                                                                  tCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAg                                     >  1:4645613/1‑41 (MQ=255)                                                                   cATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCa                                >  1:2829690/1‑45 (MQ=255)                                                                   cATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCa                                >  1:5633186/1‑45 (MQ=255)                                                                   cATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAGGTGGTCGACCATTTCCtac      >  1:3684893/1‑69 (MQ=255)                                                                   cATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAGGTGGTCAACCATTTCCTgc      >  1:3693472/1‑71 (MQ=255)                                                                   cATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAGGTGGTCAACCATTTCCTgc      >  1:1981534/1‑71 (MQ=255)                                                                   cATCGTATTCCGGAGTAAGCAGGAAGCGAACCATACGCAGTTTCa                                >  1:5174622/1‑45 (MQ=255)                                                                       gTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAGGTGGTCAACCATTTCCTGCGctt  >  1:4107251/1‑71 (MQ=255)                                                                       |                                                                       TACGACCGTCGAGGCCCATACCACCGATAGATTCGGTTGCCCAGATCGGGTCGCCAGAGAACAGTTCATCGTATTCCGGAGTACGCAGGAAGCGAACCATACGCAGTTTCATGACCAGGTGGTCAACCATTTCCTGCGCTT  >  Exported/609212‑609352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑