BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	Exported	609,792	A→T	25.7%	T154T (ACT→ACA) ‡	pflB ←	pyruvate formate lyase I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	Exported	609,792	0	A	T	25.7%	200.0 / 71.7	105	T154T (ACT→ACA) ‡	pflB	pyruvate formate lyase I
Reads supporting (aligned to +/- strand): ref base A (42/36); new base T (14/13); total (56/49)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01

Only 100 of 106 total aligned reads displayed.

CCACGGCCATATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGATTTTTTTG  >  Exported/609727‑609852

ccacggccaTATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGTCAACGCAGGATGTCCGGAGTGTa                                                         <  1:4426013/71‑1 (MQ=255)

ccacggccaTATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTa                                                         <  1:119365/71‑1 (MQ=255)

ccacggccaTAGCCATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTa                                                         <  1:4890959/71‑1 (MQ=255)

 cacggccaTATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTaa                                                        <  1:609488/71‑1 (MQ=255)

 cacggccaTATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTa                                                         <  1:472761/70‑1 (MQ=255)

 cacggccaTAGCCATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTaa                                                        <  1:5234997/71‑1 (MQ=255)

  acggccaTAGCCATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTaaa                                                       >  1:1256356/1‑71 (MQ=255)

  acggccaTAGCCATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTa                                                         <  1:826443/69‑1 (MQ=255)

   cggccaTATGCATCTGGCAGACCTTTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTaaa                                                       >  1:2340349/1‑70 (MQ=255)

   cggccaTATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTaaa                                                       >  1:1699264/1‑70 (MQ=255)

   cggccaTATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAAc                                                      >  1:5312540/1‑71 (MQ=255)

   cggccaTATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAAc                                                      >  1:2896784/1‑71 (MQ=255)

    ggccaTATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACg                                                     <  1:114108/71‑1 (MQ=255)

    ggccaTAGCCATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAAca                                                     <  1:5066423/71‑2 (MQ=255)

      ccaTAGCCATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATc                                                   <  1:4805222/71‑1 (MQ=255)

       caTATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCg                                                  <  1:1392433/71‑1 (MQ=255)

         tatGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTa                                                         <  1:2781513/62‑1 (MQ=255)

         tatGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGaa                                                <  1:1112119/71‑1 (MQ=255)

         tatGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGaa                                                <  1:4442888/71‑1 (MQ=255)

          agccATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCaaa                                                >  1:4424970/4‑70 (MQ=255)

          agccATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCaaa                                                >  1:4223194/4‑70 (MQ=255)

          agccATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCaaa                                                >  1:2467907/4‑70 (MQ=255)

           tGCATCTGGCAGACCGGGCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAaca                                              >  1:3822322/1‑71 (MQ=255)

           gccATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTaaa                                                       >  1:35780/3‑62 (MQ=255)

           gccATCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCaaat                                               <  1:4228793/68‑2 (MQ=255)

               tCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTa                                                         <  1:685436/56‑1 (MQ=255)

               tCTGGTAAACCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTa                                                         <  1:145809/56‑1 (MQ=255)

               tCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTa                                                         <  1:5121823/56‑1 (MQ=255)

                cTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGccc                                         >  1:4247352/1‑71 (MQ=255)

                 tGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTa                                                         <  1:1846544/54‑1 (MQ=255)

                 tGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCg                                                  >  1:3039087/1‑61 (MQ=255)

                 tGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCt                                        >  1:5075076/1‑71 (MQ=255)

                    cAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGaa                                                >  1:1376146/1‑60 (MQ=255)

                    cAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGaa                                                >  1:3868989/1‑60 (MQ=255)

                    cAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGaa                                                >  1:4702682/1‑60 (MQ=255)

                    cAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGT‑CGGAGTGTAAACGTCGaa                                                >  1:4552518/1‑59 (MQ=255)

                     aaaCCGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGCCCTGGt                                     >  1:1024750/3‑70 (MQ=255)

                       aCCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTtgt                                  <  1:183171/71‑1 (MQ=255)

                         cGGTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGCCCTGGTtatgg                                >  1:3710304/1‑70 (MQ=255)

                          ggTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTa                                                         <  1:3069347/45‑1 (MQ=255)

                           gTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGccc                                         >  1:5571530/1‑60 (MQ=12)

                           gTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGccc                                         >  1:4581481/1‑60 (MQ=12)

                           gTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGccc                                         >  1:4575174/1‑60 (MQ=12)

                           gTCAGCACGCCAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGccc                                         >  1:4106300/1‑60 (MQ=12)

                           gTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAaca                                              >  1:1149188/1‑55 (MQ=255)

                           gTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAac                                               >  1:1333273/1‑54 (MQ=255)

                            tCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTaaa                                                       >  1:2025101/1‑45 (MQ=255)

                            tCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTaaa                                                       >  1:3094220/1‑45 (MQ=255)

                             cAGAACACCAGATTTACGGCAACGCATGATGTCCGGAGTGTAAACGTCg                                                  <  1:417847/49‑1 (MQ=255)

                              aGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGttt                            >  1:4540961/1‑70 (MQ=255)

                               gAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTTAACGTCGaa                                                >  1:4909086/1‑49 (MQ=255)

                               gAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGaa                                                >  1:2810451/1‑49 (MQ=255)

                               gAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGaa                                                >  1:1354427/1‑49 (MQ=255)

                                aaCACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAaca                                              >  1:3661589/1‑50 (MQ=255)

                                aaCACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTa                          >  1:1366394/1‑70 (MQ=255)

                                    ccAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGCCCTGGTTATGGGTTTTACgcag                     <  1:5526446/71‑4 (MQ=255)

                                     cAGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGCCCTGGTTATGGGTTTTACg                        >  1:4448415/1‑67 (MQ=255)

                                      aGATTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGCCCTGGTTATGGGTTTTACg                        >  1:5020873/1‑66 (MQ=255)

                                      aGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTAtt                   >  1:4220959/1‑71 (MQ=255)

                                       gATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAaca                                              >  1:425310/1‑43 (MQ=255)

                                       gATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTAtt                   >  1:5335648/1‑70 (MQ=255)

                                       gATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTc                  <  1:2987674/71‑1 (MQ=255)

                                        aTTTACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGCCCTGGTTATGGGt                              <  1:1816085/58‑1 (MQ=12)

                                         tttACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGa                                                 >  1:5605969/1‑38 (MQ=255)

                                         tttAAGGCAACGCAGGATGTCCGGAGTGTAAACGTCGaa                                                >  1:5282951/1‑39 (MQ=255)

                                           tACGGCAGCGCAGCATATCCGGTGAGTAAACATCAAATACGCCCTGGTTATGGGTTTTACg                        >  1:624521/1‑61 (MQ=16)

                                           tACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGa                                <  1:718323/53‑1 (MQ=255)

                                           tACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGa                                <  1:5670167/53‑1 (MQ=255)

                                            aCGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTg              >  1:4481659/1‑70 (MQ=255)

                                               gCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGa                                <  1:257130/49‑1 (MQ=255)

                                                cAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGtttt                           >  1:1238475/1‑53 (MQ=255)

                                                 aaCGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGAtt        >  1:3581036/1‑71 (MQ=255)

                                                  aCGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTg              >  1:2324190/1‑64 (MQ=255)

                                                  aCGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTg              <  1:2607159/64‑1 (MQ=255)

                                                   cGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGAtttt      <  1:1350574/71‑1 (MQ=255)

                                                    gCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTa                          >  1:1039979/1‑50 (MQ=255)

                                                    gCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTa                          >  1:708863/1‑50 (MQ=255)

                                                    gCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGAttttt     <  1:1592137/71‑1 (MQ=255)

                                                     cAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACg                        >  1:683568/1‑51 (MQ=255)

                                                     cAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACg                        >  1:2670501/1‑51 (MQ=255)

                                                     cAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACg                        >  1:3635746/1‑51 (MQ=255)

                                                     cAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACg                        >  1:1739280/1‑51 (MQ=255)

                                                     cAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACg                        >  1:2460056/1‑51 (MQ=255)

                                                     cAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGAtttttt    >  1:2801026/1‑71 (MQ=255)

                                                     cAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGAtttttt    >  1:1047864/1‑71 (MQ=255)

                                                     cAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGAttttt     <  1:5433830/70‑1 (MQ=255)

                                                       ggATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAg                               <  1:3102581/42‑1 (MQ=255)

                                                       ggATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCGGTGAAGATTTTTTTg  <  1:1513943/71‑1 (MQ=255)

                                                       ggATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGATTTTTTTg  <  1:3189165/71‑1 (MQ=255)

                                                        gATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTa                          <  1:3490918/46‑1 (MQ=255)

                                                           gTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGt                              <  1:166337/39‑1 (MQ=255)

                                                           gTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGt                              <  1:3298447/39‑1 (MQ=255)

                                                           gTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGt                              <  1:2950033/39‑1 (MQ=255)

                                                           gTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGt                              <  1:1694819/39‑1 (MQ=255)

                                                             ccGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGAttttt     <  1:4760888/62‑1 (MQ=255)

                                                              cGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGttt                            <  1:1222441/38‑1 (MQ=255)

                                                              cGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTc                  <  1:4623315/48‑1 (MQ=255)

                                                              cGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGAttttt     <  1:1991010/61‑1 (MQ=255)

                                                                gAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGAttttttt   <  1:2310444/61‑1 (MQ=255)

                                                                 aGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGAttttttt   <  1:210451/60‑1 (MQ=255)

CCACGGCCATATGCATCTGGCAGACCGGTCAGAACACCAGATTTACGGCAACGCAGGATGTCCGGAGTGTAAACGTCGAACACGCCCTGGTTGTGAGTTTTACGGTATTCAGTGAAGATTTTTTTG  >  Exported/609727‑609852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`