| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 832,699 | C→T | 12.5% | A386V (GCG→GTG) | narG → | nitrate reductase 1, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 832,699 | 0 | C | T | 12.5% | 142.5 / 9.3 | 56 | A386V (GCG→GTG) | narG | nitrate reductase 1, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (28/21); new base T (3/4); total (31/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGCGCTGGGCCAGGAAAACAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAA > Exported/832630‑832769 | aTGCGCTGGGCCAGGAAAACAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTgcg > 1:1871332/1‑71 (MQ=255) gcTGGGCCAGGAAAACAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCg > 1:2032484/1‑70 (MQ=255) ggCCAGGAAAACAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACgg > 1:2288422/1‑71 (MQ=255) aGGAAAACAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCg < 1:1852836/62‑1 (MQ=255) aGGAAAACAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCt < 1:486419/71‑1 (MQ=255) aGGAAAACAATCCGGAATGGAAAACTGTCGCCTTTAATACAAATGGCGAAATGGTTGCGCCGAACGGTTc > 1:1381824/1‑70 (MQ=255) ggAAAACAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTgc < 1:612997/57‑1 (MQ=255) aaaaCAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTgcgc > 1:781686/1‑57 (MQ=255) aaaaCAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTgcgc > 1:2697215/1‑57 (MQ=255) aaaaCAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTAtt > 1:497840/1‑71 (MQ=255) aaaCAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTAt > 1:5661294/1‑69 (MQ=255) aaaCAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTAt > 1:5679711/1‑69 (MQ=255) aaaCAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTg > 1:3755832/1‑71 (MQ=255) aaaCAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTg > 1:4676397/1‑71 (MQ=255) aaCAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTgg > 1:309927/1‑71 (MQ=255) aaCAATCCGCAGTGGAAAACCGTAGCAGTTAATACCGCAGGTGAATTGGTAGTGCCGAACGGTTCGAtcg > 1:1829555/1‑68 (MQ=255) aaCAATCCGCAGTGGAAAACCGTAGCAGTTAATACCGCAGGTGAATTGGTAGTGCCGAACGGTTCGAtc > 1:1287352/1‑68 (MQ=255) ggAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACgg < 1:1353414/54‑1 (MQ=255) ggAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACgg < 1:2235080/54‑1 (MQ=255) ggAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACgg < 1:222466/54‑1 (MQ=255) ggAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCt < 1:3559558/71‑1 (MQ=255) agtGGAAAACCGTAGCAGTTAATACCGCAGGTGAATTGGTAGTGCCGAACGGTTCGATTGGTTTCCGCTgg < 1:5462661/69‑1 (MQ=255) agtGGAAAACCGTAGCAGTTAATACCGCAGGTGAATTGGTAGTGCCGAACGGTTCGATTGGTTTCCGCTgg < 1:4568169/69‑1 (MQ=255) agtGGAAAACCGTAGCAGTTAATACCGCAGGTGAATTGGTAGTGCCGAACGGTTCGATTGGTTTCCGCTgg < 1:2090708/69‑1 (MQ=255) aaTGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTgg < 1:1443698/71‑1 (MQ=255) aTGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCt < 1:2674713/55‑1 (MQ=255) tGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAAc < 1:1467036/48‑1 (MQ=255) tGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTAtt < 1:3854500/57‑1 (MQ=255) ggAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTc < 1:5639540/52‑1 (MQ=255) gAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTgg > 1:4543940/1‑57 (MQ=255) gAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGc > 1:3160069/1‑70 (MQ=255) aaCTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTggg < 1:4571973/65‑1 (MQ=255) aCTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGc > 1:2670162/1‑60 (MQ=255) gCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCaa < 1:3167222/71‑1 (MQ=255) gCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCa > 1:2257604/1‑70 (MQ=255) gCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCa > 1:3800650/1‑70 (MQ=255) ccTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTc < 1:888479/40‑1 (MQ=255) tAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGc > 1:1573237/1‑49 (MQ=255) tAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGc > 1:4182093/1‑49 (MQ=255) tAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGc > 1:5345206/1‑49 (MQ=255) tAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATgg > 1:4799910/1‑70 (MQ=255) tACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCg < 1:1178768/53‑1 (MQ=255) tACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATc < 1:4637853/71‑1 (MQ=255) aCCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCg < 1:2057519/52‑1 (MQ=255) cAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCtt < 1:1573428/70‑1 (MQ=255) cAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTg < 1:4891240/71‑1 (MQ=255) cAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTg < 1:1672421/71‑1 (MQ=255) gtgAATTGGTAGTGCCGAACGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGAATCt < 1:3070023/62‑1 (MQ=255) gCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATg > 1:148097/1‑58 (MQ=255) gCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATg > 1:4714306/1‑58 (MQ=255) gCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATg > 1:2187086/1‑58 (MQ=255) gAATTGGTAGTGCCGAACGGTTCGATTGGTTTCCGCTGGGGAGaaaaa > 1:5324752/1‑47 (MQ=16) aaaTGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTggg > 1:1987587/1‑39 (MQ=255) aaaTGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTggg > 1:4203655/1‑39 (MQ=255) aTGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGaa > 1:76384/1‑44 (MQ=255) aTGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGa < 1:1441733/71‑1 (MQ=255) tGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGAc > 1:5576061/1‑71 (MQ=255) ggTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGaa > 1:2464821/1‑42 (MQ=255) tGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCtt > 1:1557746/1‑55 (MQ=255) tGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCtt > 1:2226379/1‑55 (MQ=255) gcgcCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGagca < 1:1120922/59‑1 (MQ=255) cgcCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGaa < 1:215322/37‑1 (MQ=255) cgcCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCaaa < 1:173592/71‑1 (MQ=255) cgcCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCaa < 1:1460577/70‑1 (MQ=255) | ATGCGCTGGGCCAGGAAAACAATCCGGAATGGAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAA > Exported/832630‑832769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |