| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 832,730 | C→A | 26.1% | G396G (GGC→GGA) | narG → | nitrate reductase 1, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 832,730 | 0 | C | A | 26.1% | 150.1 / 36.8 | 69 | G396G (GGC→GGA) | narG | nitrate reductase 1, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (22/29); new base A (2/16); total (24/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.00e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.93e-01 | |||||||||||
GAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGCAACT > Exported/832661‑832795 | gAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGc > 1:3160069/1‑70 (MQ=255) gCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCaa < 1:3167222/71‑1 (MQ=255) gCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCa > 1:3800650/1‑70 (MQ=255) gCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCa > 1:2257604/1‑70 (MQ=255) tAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATgg > 1:4799910/1‑70 (MQ=255) tACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCg < 1:1178768/53‑1 (MQ=255) tACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATc < 1:4637853/71‑1 (MQ=255) aCCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCg < 1:2057519/52‑1 (MQ=255) cAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCtt < 1:1573428/70‑1 (MQ=255) cAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTg < 1:4891240/71‑1 (MQ=255) cAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTg < 1:1672421/71‑1 (MQ=255) gtgAATTGGTAGTGCCGAACGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGAATCt < 1:3070023/62‑1 (MQ=255) gCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATg > 1:148097/1‑58 (MQ=255) gCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATg > 1:2187086/1‑58 (MQ=255) gCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATg > 1:4714306/1‑58 (MQ=255) gAATTGGTAGTGCCGAACGGTTCGATTGGTTTCCGCTGGGGAGaaaaa > 1:5324752/1‑47 (MQ=16) aTGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGaa > 1:76384/1‑44 (MQ=255) aTGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGa < 1:1441733/71‑1 (MQ=255) tGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGAc > 1:5576061/1‑71 (MQ=255) ggTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGaa > 1:2464821/1‑42 (MQ=255) tGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCtt > 1:1557746/1‑55 (MQ=255) tGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCtt > 1:2226379/1‑55 (MQ=255) gcgcCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGagca < 1:1120922/59‑1 (MQ=255) tgcCGAACGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGa < 1:2862507/47‑1 (MQ=21) cgcCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGaa < 1:215322/37‑1 (MQ=255) cgcCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCaaa < 1:173592/71‑1 (MQ=255) cgcCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCaa < 1:1460577/70‑1 (MQ=255) gcCGAACGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCa < 1:3965806/41‑1 (MQ=16) ccGAACGGTTCTATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGAATCtg > 1:2078621/1‑50 (MQ=37) ccGAACGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCa < 1:2794787/40‑1 (MQ=16) ccGAACGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGa < 1:3684995/46‑1 (MQ=21) ccGAACGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGa < 1:879464/46‑1 (MQ=21) ccGAACGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGa < 1:1606618/46‑1 (MQ=21) cGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACt > 1:1844029/1‑71 (MQ=255) aaCGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTgg > 1:4600882/1‑71 (MQ=255) aaCGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTgg > 1:4364605/1‑71 (MQ=255) aaCGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATg < 1:2084685/41‑1 (MQ=16) aaCGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATg < 1:5512708/41‑1 (MQ=16) aaCGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGAAt < 1:3798485/45‑1 (MQ=21) aaCGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGAAt < 1:1231966/45‑1 (MQ=21) aaCGGTTCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGAAt < 1:4563994/45‑1 (MQ=21) cGGTTCTATTGGCTTCCGCTGGGGCGAGAACGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCg < 1:61479/71‑1 (MQ=255) cGGTTCTATTGGCTTACGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCg < 1:20356/71‑1 (MQ=255) ttCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCa > 1:2032609/1‑59 (MQ=255) ttCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAAc > 1:5263683/1‑63 (MQ=255) ttCGATTGGTTTCCGCTGGGGAGAAAAAGGCAAATGGaa < 1:622770/39‑1 (MQ=16) ttGGTTTCCGCTGGGGAGAAAAAGGCAAATGGAATCTGGaa < 1:1539148/41‑2 (MQ=16) ttGGTTTCCGCTGGGGAGAAAAAGGCAAATGGAATCTGGa < 1:2229447/40‑1 (MQ=16) ttGGTTTCCGCTGGGGAGAAAAAGGCAAATGGAATCTGGa < 1:5375076/40‑1 (MQ=16) ttGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAgcgc < 1:915561/47‑1 (MQ=255) ttGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAgcgc < 1:4067535/47‑1 (MQ=255) ggCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGag > 1:2284561/1‑39 (MQ=255) ggCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAAcc > 1:1501415/1‑69 (MQ=255) ggCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCg < 1:4592070/70‑1 (MQ=255) gCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAg < 1:599192/71‑1 (MQ=255) cTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGc < 1:2787474/71‑1 (MQ=255) ccGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTg > 1:407422/1‑70 (MQ=255) ccGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTg > 1:824072/1‑70 (MQ=255) ccGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTG‑‑GAAGAAACCGAGCTGCaa > 1:1599119/1‑71 (MQ=255) cGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGc < 1:3297276/70‑1 (MQ=255) cGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGc < 1:4021464/70‑1 (MQ=255) cGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGc < 1:875034/70‑1 (MQ=255) cGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGc < 1:5189063/70‑1 (MQ=255) cGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGc < 1:4802477/70‑1 (MQ=255) gCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGc < 1:2179175/69‑1 (MQ=255) gCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGCaa < 1:1317244/71‑1 (MQ=255) cTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCaaa < 1:5366291/46‑1 (MQ=255) cTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGCAAc < 1:255902/71‑1 (MQ=255) tGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGCAACt > 1:1224346/1‑71 (MQ=255) gggCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGCAACt < 1:5641603/69‑1 (MQ=255) | GAAAACTGTCGCCTTTAATACCAATGGCGAAATGGTTGCGCCGAACGGTTCTATTGGCTTCCGCTGGGGCGAGAAGGGCAAATGGAATCTTGAGCAGCGCGACGGCAAAACTGGCGAAGAAACCGAGCTGCAACT > Exported/832661‑832795 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |