| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 834,527 | C→T | 41.4% | I995I (ATC→ATT) | narG → | nitrate reductase 1, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 834,527 | 0 | C | T | 41.4% | 38.2 / 74.7 | 70 | I995I (ATC→ATT) | narG | nitrate reductase 1, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (20/21); new base T (17/12); total (37/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.54e-01 | |||||||||||
CTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACCTGGTCTGGTCTGGAAGAT > Exported/834460‑834596 | cTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCAGGCGCTGAATAAAGAAGACGAGAAGATCCGc > 1:4356105/1‑71 (MQ=255) cTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCcg > 1:2001859/1‑71 (MQ=255) gAGCGAATTTACCGGTCGTGACCATACGCATCTGGGGCTGAATAAAGAAGACGAGAAGATCCGCTTCcgc > 1:3195853/1‑70 (MQ=255) aGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGa < 1:1801173/71‑1 (MQ=255) aGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGa < 1:2626879/71‑1 (MQ=255) aGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGa > 1:1934889/1‑71 (MQ=255) aaTTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGatat > 1:3871637/1‑70 (MQ=255) aaTTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATAtt < 1:3332867/71‑1 (MQ=255) aTTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATAtt > 1:3796856/1‑70 (MQ=255) taacGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCa > 1:4472993/4‑69 (MQ=255) tACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCa > 1:1068834/1‑69 (MQ=255) cGGGCGCGAACATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGata < 1:266052/62‑1 (MQ=255) cGGGCGCGAACATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGcg > 1:571306/1‑69 (MQ=255) cGGGCGCGAACATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGcg > 1:5275372/1‑69 (MQ=255) ggTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGcaca < 1:1678312/71‑1 (MQ=255) cGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGata > 1:2690224/1‑58 (MQ=255) aacATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCcgcg > 1:5178234/3‑70 (MQ=255) acATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGc > 1:650790/2‑65 (MQ=255) acATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGc > 1:2943682/2‑65 (MQ=255) acATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCcgcgt > 1:363581/2‑69 (MQ=255) acATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCcgcgt > 1:1830055/2‑69 (MQ=255) acATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCcgcgt > 1:4818750/2‑69 (MQ=255) cATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCaa < 1:5646884/71‑1 (MQ=255) cATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTaa < 1:4857332/71‑1 (MQ=255) cATACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTaa < 1:4841285/71‑1 (MQ=255) aTACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCg < 1:2931192/40‑1 (MQ=255) tACCCATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTaaaa > 1:4450702/1‑71 (MQ=255) cccATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAAtt < 1:1796395/69‑1 (MQ=255) cGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCcgc > 1:1926493/1‑63 (MQ=255) ccATCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAATTa < 1:1309694/70‑1 (MQ=255) tCTGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAg < 1:4613337/49‑1 (MQ=255) tGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGatat > 1:2538345/1‑43 (MQ=19) tGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGat > 1:576717/1‑41 (MQ=19) tGGCGCTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGat > 1:4701327/1‑41 (MQ=19) cgcTGCACAAAGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAAtt < 1:4708290/62‑1 (MQ=255) gAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGa > 1:2512401/1‑71 (MQ=255) cacaaaGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAATTATCTCCAGCCCCAc > 1:2355412/4‑71 (MQ=255) aaTAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCg < 1:1233782/69‑1 (MQ=255) aaTAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGa < 1:4425568/70‑1 (MQ=255) acaaaGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAATTATCTCCAGCCCCAcc < 1:5475291/69‑1 (MQ=255) tAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCcgc > 1:632745/1‑47 (MQ=255) aaaGAGGACGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAATTAtc > 1:3525364/1‑57 (MQ=255) aagaagACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCaaaa > 1:3180791/1‑51 (MQ=255) aagaagACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCaaaa > 1:2592900/1‑51 (MQ=255) agaggaCGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAATTATCTCCAGCCCCACctggt > 1:1276809/1‑71 (MQ=255) gaggaCGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAATTATCTCCAGCCCCACctggtc < 1:2587385/68‑1 (MQ=255) gaagaCGAGAAGATCCGCTTCCGCGATATTCAGGc < 1:4392049/35‑1 (MQ=255) gaagaCGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCaaaa < 1:2206360/49‑1 (MQ=255) gaagaCGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACctg > 1:1353679/1‑68 (MQ=255) gaagaCGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACct > 1:5152866/1‑67 (MQ=255) aagaCGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACctggtct > 1:3823411/1‑71 (MQ=255) gaCGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCcgc > 1:5619892/1‑40 (MQ=37) gaCGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGccc < 1:4885784/59‑1 (MQ=255) aCGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAATTATCTCCAGCCCCACctggtccggt < 1:1970290/71‑1 (MQ=255) aCGAGAAGATTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAATTATCTCCAGCCCCACctggtccggt < 1:4856072/71‑1 (MQ=255) aCGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACctggtctggt > 1:3877035/1‑71 (MQ=255) cGAGAAGATCCGCTTCCGCGATATTCAGGCACAGcc < 1:2288202/36‑1 (MQ=255) cGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAg > 1:3621826/1‑54 (MQ=255) cGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACCtggtctggtc < 1:3241924/71‑1 (MQ=255) cGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACCtggtctggtc < 1:237431/71‑1 (MQ=255) gagaAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACctggtctgg < 1:2699864/68‑1 (MQ=255) aagaTCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTAtctc < 1:3372584/47‑1 (MQ=255) agaTCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACCTGGtctggtctgg < 1:1168819/69‑1 (MQ=255) gaTTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAATTATCTCCAGCCCCAc > 1:2737495/1‑54 (MQ=255) gaTTCGCTTTCGCGATATTCAGGCGCAGCCGCGTAAAATTATCTCCAGCCCCACCTGGTCCGGTCTGGaaa < 1:3602679/71‑2 (MQ=255) aTCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACCTGGtctcgtctgg < 1:728429/67‑1 (MQ=255) tCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAAt < 1:3432805/37‑1 (MQ=255) tCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTAt > 1:555055/1‑40 (MQ=255) tCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTAt < 1:5161902/40‑1 (MQ=255) tCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACCTGGTCTGGTCTGGAAGAt < 1:2317952/71‑1 (MQ=255) | CTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAGAAGACGAGAAGATCCGCTTCCGCGATATTCAGGCACAGCCGCGCAAAATTATCTCCAGCCCGACCTGGTCTGGTCTGGAAGAT > Exported/834460‑834596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |