| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,611,527 | A→G | 9.7% | L141P (CTT→CCT) | nikB ← | nickel transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,611,527 | 0 | A | G | 9.7% | 442.6 / 28.8 | 154 | L141P (CTT→CCT) | nikB | nickel transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (77/62); new base G (9/6); total (86/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
Only 100 of 157 total aligned reads displayed.
ATTGCAGATACACCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATGGCGCGCCGCCCAGATACCGAGCGG > Exported/2611459‑2611597 | aTTGCAGATACACCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGa < 1:3852514/71‑1 (MQ=255)aTTGCAGATACACCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGa < 1:1337813/71‑1 (MQ=255) gCAGATACACCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGaa > 1:2370381/1‑69 (MQ=255) cAGATACACCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGaaa > 1:2800082/1‑69 (MQ=255) cAGATACACCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGaaa > 1:2233848/1‑69 (MQ=255) aGATACACCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAAcgc < 1:2916637/71‑1 (MQ=255) aGATACACCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAAcgc < 1:1766155/71‑1 (MQ=255) gATACACCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAAcgc < 1:348163/70‑1 (MQ=255) acacCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGAt > 1:2049907/1‑70 (MQ=255) cacCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCGAGAAACGCGATGa < 1:755874/71‑1 (MQ=255) acCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGaa < 1:4092986/71‑1 (MQ=255) cGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCGAGAAACGCGAtta < 1:2557219/68‑3 (MQ=255) cGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAAc > 1:431244/1‑71 (MQ=255) cGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAAc > 1:1013650/1‑71 (MQ=255) cGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAAc > 1:3556479/1‑71 (MQ=255) cGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAAc > 1:3932919/1‑71 (MQ=255) cGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAAc > 1:277181/1‑71 (MQ=255) cGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAAc > 1:1123877/1‑71 (MQ=255) cGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAAc > 1:3899007/1‑71 (MQ=255) ccATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCGAGAAACGCGATGa < 1:2232614/60‑1 (MQ=255) tCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGaaa > 1:2348923/1‑71 (MQ=255) tCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGaa > 1:3813480/1‑70 (MQ=255) gTAAAAGCGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATc > 1:667708/1‑67 (MQ=255) gTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAAt > 1:2997505/1‑66 (MQ=255) gTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATc > 1:4293140/1‑67 (MQ=255) gTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATc > 1:634750/1‑67 (MQ=255) gTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGc < 1:4876930/71‑1 (MQ=255) gTAAAAACGCCAGCCAGAAGTTAGGCATCGACACCCCAAGAAACGCGATGAAACGTACGGCGAAATCCgg > 1:1525943/1‑70 (MQ=255) tAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACg < 1:2177284/54‑1 (MQ=255) tAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACg < 1:3206255/54‑1 (MQ=255) tAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACg < 1:1343664/54‑1 (MQ=255) tAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACg < 1:3871289/54‑1 (MQ=255) tAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACg < 1:1405452/54‑1 (MQ=255) tAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCa < 1:3125399/71‑1 (MQ=255) tAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCa < 1:126703/71‑1 (MQ=255) tAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCa < 1:3853901/71‑1 (MQ=255) tAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCa < 1:2452337/71‑1 (MQ=255) tAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCa < 1:4059465/71‑1 (MQ=255) aaaaaCGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCgg > 1:4263384/1‑68 (MQ=255) aaaaaCGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCgg > 1:1490530/1‑68 (MQ=255) aaaaCGCCAGCCAGAAGTTAGGCATCGACACGCCGAGAAACGCGATGa < 1:4637770/48‑1 (MQ=255) aaaaCGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCa > 1:3947825/1‑69 (MQ=255) aaaaCGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:3973910/1‑71 (MQ=255) aaCGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACg > 1:2588081/1‑71 (MQ=255) cGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGt < 1:1031924/71‑1 (MQ=255) cGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGt < 1:1897425/71‑1 (MQ=255) gccagccaGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGt < 1:656061/70‑1 (MQ=255) cagccagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTcgc < 1:5118359/71‑1 (MQ=255) cagccagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTcgc < 1:1812660/71‑1 (MQ=255) cagccagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTcgc < 1:3398459/71‑1 (MQ=255) cagccagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTcgc < 1:3392201/71‑1 (MQ=255) gccagAAGTTAGGCATCGACACGCCAGGAAACGCGATGAAACg < 1:571968/43‑1 (MQ=255) gccagAAGTTAGGCATCGACACGCCAGGAAACGCGATGAAACg < 1:1591956/43‑1 (MQ=255) gccagAAGTTAGGCATCGACACGCCAGGAAACGCGATGAAACg < 1:3448849/43‑1 (MQ=255) gccagAAGTTAGGCATCGACACGCCAGGAAACGCGATGAAACg < 1:4035267/43‑1 (MQ=255) gccagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGa > 1:4560115/1‑71 (MQ=255) gccagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGa > 1:4449573/1‑71 (MQ=255) gccagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGa > 1:4244363/1‑71 (MQ=255) cagAAGTTAGGCATCGACACGCCAGGAAACGCGATGaaa > 1:4691223/1‑39 (MQ=255) cagAAGTTAGGCATCGACACGCCAGGAAACGCGATGAAACGTa > 1:126991/1‑43 (MQ=255) cagAAGTTAGGCATCGACACGCCAGGAAACGCGATGAAACGTa > 1:115655/1‑43 (MQ=255) cagAAGTTAGGCATCGACACGCCAGGAAACGCGATGAAACGTa > 1:407429/1‑43 (MQ=255) cagAAGTTAGGCATCGACACGCCAGGAAACGCGATGAAACGTa > 1:3332518/1‑43 (MQ=255) cagAAGTTAGGCATCGACACGCCAGGAAACGCGATGAAACGTa > 1:4476154/1‑43 (MQ=255) cagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTAc < 1:4916711/44‑1 (MQ=255) cagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTAc < 1:3291668/44‑1 (MQ=255) cagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTAc < 1:3035100/44‑1 (MQ=255) cagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTAc < 1:1732823/44‑1 (MQ=255) cagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTAc < 1:1989919/44‑1 (MQ=255) cagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATg < 1:3794764/71‑1 (MQ=255) cagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATg < 1:1036352/71‑1 (MQ=255) cagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATg < 1:2673711/71‑1 (MQ=255) cagAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATg < 1:1982779/71‑1 (MQ=255) gTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATGgcgcg > 1:685337/1‑71 (MQ=255) aGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGAt > 1:3006062/1‑62 (MQ=255) aGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGAt > 1:4644235/1‑62 (MQ=255) aGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGAt > 1:2388617/1‑62 (MQ=255) aGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATGGCGcgccg > 1:1451681/1‑71 (MQ=255) gCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTcgc < 1:3522723/57‑1 (MQ=255) aTCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATGGCGCGCCGCCCa < 1:4114344/71‑1 (MQ=255) tCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCa < 1:2541349/45‑1 (MQ=255) tCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCa < 1:3355631/45‑1 (MQ=255) tCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATGGCGCGCCGCCCAg < 1:917118/71‑1 (MQ=255) cGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCa < 1:804166/44‑1 (MQ=255) cGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTcg > 1:4540217/1‑52 (MQ=255) cGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTcg > 1:1723930/1‑52 (MQ=255) gACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:261374/1‑45 (MQ=255) gACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:2389678/1‑45 (MQ=255) gACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:3452696/1‑45 (MQ=255) gACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:1485329/1‑45 (MQ=255) gACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:2269637/1‑45 (MQ=255) gACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:4295586/1‑45 (MQ=255) acGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATGGCGCGCCGCCCAGATAcc > 1:1322864/1‑71 (MQ=255) ccAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:1610776/1‑39 (MQ=255) ccAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:4897868/1‑39 (MQ=255) ccAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:3197792/1‑39 (MQ=255) ccAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:1050232/1‑39 (MQ=255) ccAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGa > 1:2670941/1‑39 (MQ=255) aGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATGGCGCGCCGCCCAGATACCg > 1:5039176/1‑66 (MQ=255) aGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATGGCGCGCCGCCCAGATACCGAGCgg > 1:4857585/1‑71 (MQ=255) | ATTGCAGATACACCGAAAACGCCATCACCAGTAAAAACGCCAGCCAGAAGTTAGGCATCGACACGCCAAGAAACGCGATGAAACGTACGGCGAAATCCGGCAGACGGTCGCGATGGCGCGCCGCCCAGATACCGAGCGG > Exported/2611459‑2611597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |