| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,807,677 | T→A | 5.7% | intergenic (+496/‑611) | tyrB → / → aphA | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent/acid phosphatase/phosphotransferase, class B, non‑specific |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,807,677 | 0 | T | A | 5.7% | 261.4 / 6.1 | 88 | intergenic (+496/‑611) | tyrB/aphA | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent/acid phosphatase/phosphotransferase, class B, non‑specific |
| Reads supporting (aligned to +/- strand): ref base T (28/55); new base A (3/2); total (31/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
TTTAACCTCCTCGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGATACTTCTTCTCC > Exported/2807612‑2807740 | tttAACCTCCTCGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTaa > 1:1184996/1‑71 (MQ=255)tttAACCTCCTCGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTaa > 1:2091152/1‑71 (MQ=255)tttAACCTCCTCGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTATTACCCCTGATTTTGTTa > 1:842982/1‑70 (MQ=255) ttAACCTCCTCGGCAAAACAGCAAAGCGTGCAAATATACTTAAAGTCTTTCTTACCCCTGATTTTGTTAAc > 1:3079201/1‑71 (MQ=255) ttAACCTCCTCGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTaa > 1:4833462/1‑70 (MQ=255) ttAACCTCCTCGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAAc > 1:884539/1‑71 (MQ=255) ttAACCTCCTCGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAAc > 1:860081/1‑71 (MQ=255) tAACCTCCTCGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAAc > 1:1307409/1‑70 (MQ=255) cctcGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATc > 1:1042096/1‑70 (MQ=255) ctcGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCa < 1:3461027/70‑1 (MQ=255) ctcGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCa < 1:3880453/70‑1 (MQ=255) ggCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa < 1:2954011/70‑1 (MQ=255) ggCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa < 1:2247133/70‑1 (MQ=255) ggCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa < 1:4797662/70‑1 (MQ=255) ggCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa > 1:4991946/1‑70 (MQ=255) gCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATaaa > 1:2541822/1‑71 (MQ=255) cAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTAGTTAACAAAATCag < 1:1559923/66‑2 (MQ=39) cAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTAGTTAACAAAATCag < 1:1860764/66‑2 (MQ=39) aaaaCAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAAt < 1:3369173/70‑1 (MQ=255) aaaaCAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAAt < 1:2355216/70‑1 (MQ=255) aaaaCAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAAt < 1:222998/70‑1 (MQ=255) aaaaCAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATg < 1:1123420/71‑1 (MQ=255) aaaaCAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATg < 1:2239347/71‑1 (MQ=255) aaaaCAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATg > 1:1421595/1‑71 (MQ=255) aaaCAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTAGTTAACAAAATCaggg > 1:4900492/1‑63 (MQ=38) aaaCAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTAGTTAACAAAATCaggg > 1:3993938/1‑63 (MQ=38) aaaCAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTAGTTAACAAAATCaggg > 1:3884995/1‑63 (MQ=38) cAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaaa < 1:4619558/71‑1 (MQ=255) aaaGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaaa < 1:596546/70‑1 (MQ=255) aaaGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaaa < 1:726659/70‑1 (MQ=255) aaGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaaaaa > 1:3855125/1‑71 (MQ=255) aaGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaaaaa > 1:237995/1‑71 (MQ=255) aaGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaaaaa > 1:3352523/1‑71 (MQ=255) tGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa < 1:40198/53‑1 (MQ=255) tGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa < 1:413336/53‑1 (MQ=255) tGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa < 1:5135548/53‑1 (MQ=255) tGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa < 1:3326187/53‑1 (MQ=255) tGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa < 1:1530057/53‑1 (MQ=255) tGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa < 1:96929/53‑1 (MQ=255) tGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATa < 1:1705323/53‑1 (MQ=255) atatACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACttt < 1:2152533/65‑1 (MQ=255) atatACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACttt < 1:4091490/65‑1 (MQ=255) atatACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACttt < 1:1511756/65‑1 (MQ=255) atatACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACttt < 1:1001483/65‑1 (MQ=255) atatACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACttt < 1:5169670/65‑1 (MQ=255) tataCATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAAt < 1:3967903/50‑1 (MQ=255) tataCATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGc < 1:5113069/70‑1 (MQ=255) tataCATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGc > 1:2693855/1‑70 (MQ=255) ataCATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCaa > 1:76746/1‑71 (MQ=255) taCATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCaa > 1:3133547/1‑70 (MQ=255) taCATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCaa > 1:4576981/1‑70 (MQ=255) aTAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGa < 1:3073258/71‑1 (MQ=255) aaGTCTTTCTTACCCCTGATTTTGTTAACTAAATCaa > 1:1564703/1‑37 (MQ=255) aaGTCTTTCTTACCCCTGATTTTGTTAACTAAATCaa > 1:1858582/1‑37 (MQ=255) aaGTCTTTCTTACCCCTGATTTTGTTAACTAAATCaa > 1:4986055/1‑37 (MQ=255) aaGTCTTTCTTACCCCTGATTTTGTTAACTAAATCaa > 1:1314260/1‑37 (MQ=255) aaGTCTTTCTTACCCCTGATTTTGTTAACTAAATCaa > 1:1239406/1‑37 (MQ=255) aaGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACt > 1:2484057/1‑71 (MQ=255) aGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACtt < 1:1486589/71‑1 (MQ=255) aGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACtt < 1:4959571/71‑1 (MQ=255) gTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATTCGTGaa < 1:671792/47‑1 (MQ=255) gTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaa < 1:4642771/47‑1 (MQ=255) gTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaa < 1:1983521/47‑1 (MQ=255) gTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaa < 1:4686378/47‑1 (MQ=255) gTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaa < 1:1933556/47‑1 (MQ=255) gTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaa < 1:4864264/47‑1 (MQ=255) gTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaa < 1:2390636/47‑1 (MQ=255) gTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaa < 1:2113102/47‑1 (MQ=255) gTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaa < 1:816723/47‑1 (MQ=255) gTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaa < 1:3981786/47‑1 (MQ=255) tctttcttACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGa < 1:3648997/71‑1 (MQ=255) tctttcttACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGa < 1:1645810/71‑1 (MQ=255) tttcttACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGaaaaa > 1:176205/1‑47 (MQ=255) ttcttTCCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACtt < 1:4198450/66‑1 (MQ=255) aCCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGATActtc < 1:2192259/69‑1 (MQ=255) cTGATTTTGTTAACTAAATCAATAAATGCGTGaaa < 1:1907757/35‑1 (MQ=255) cTGATTTTGTTAACTAAATCAATAAATGCGTGaaa < 1:4918473/35‑1 (MQ=255) cTGATTTTGTTAACTAAATCAATAAATGCGTGaaa < 1:4024857/35‑1 (MQ=255) cTGATTTTGTTAACTAAATCAATAAATGCGTGaaa < 1:4089831/35‑1 (MQ=255) cTGATTTTGTTAACTAAATCAATAAATGCGTGaaa < 1:4055274/35‑1 (MQ=255) cTGATTTTGTTAACTAAATCAATAAATGCGTGaaa < 1:4046447/35‑1 (MQ=255) cTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGATACTTCTtctc > 1:823157/1‑70 (MQ=255) tGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTa > 1:2506620/1‑41 (MQ=255) tttGTTAACTAAATCAATAAATGCGTGAAAAACTTTAc > 1:28427/1‑38 (MQ=255) tttGTTAACTAAATCAATAAATGCGTGAAAAACTTTAc > 1:2945526/1‑38 (MQ=255) tttGTTAACTAAATCAATAAATGCGTGAAAAACTTTAc > 1:3867339/1‑38 (MQ=255) tttGTTAACTAAATCAATAAATGCGTGAAAAACTTTAc > 1:3159225/1‑38 (MQ=255) tttGTTAACTAAATCAATAAATGCGTGAAAAACTTTAc > 1:536646/1‑38 (MQ=255) tttGTTAACTAAATCAATAAATGCGTGAAAAACTTTAc > 1:5138751/1‑38 (MQ=255) tttGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCaa > 1:40076/1‑44 (MQ=255) tttGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCaa > 1:1390589/1‑44 (MQ=255) tttGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCaa > 1:2164906/1‑44 (MQ=255) tttGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCaa > 1:4212356/1‑44 (MQ=255) ttGTTAACTAAATCAATAAATGTGTGAAAAACTTTACTTGCAATAGAACTTGa > 1:2343507/1‑53 (MQ=255) ttGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGa > 1:526947/1‑53 (MQ=255) ttGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGa > 1:3480723/1‑53 (MQ=255) ttGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGa > 1:3109206/1‑53 (MQ=255) ttGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGa > 1:4097187/1‑53 (MQ=255) ttGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGa > 1:1572684/1‑53 (MQ=255) ttGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGa > 1:3501528/1‑53 (MQ=255) | TTTAACCTCCTCGGCAAAACAGCAAAGCGTGCAAATATACATAAAGTCTTTCTTACCCCTGATTTTGTTAACTAAATCAATAAATGCGTGAAAAACTTTACTTGCAATAGAACTTGATACTTCTTCTCC > Exported/2807612‑2807740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |