| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,965,109 | C→T | 7.4% | D197D (GAC→GAT) | deoA → | thymidine phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,965,109 | 0 | C | T | 7.4% | 287.5 / 9.4 | 94 | D197D (GAC→GAT) | deoA | thymidine phosphorylase |
| Reads supporting (aligned to +/- strand): ref base C (37/50); new base T (4/3); total (41/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
CCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCT > Exported/2965039‑2965177 | ccGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGAc > 1:4813304/1‑71 (MQ=255) cAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGAcgcg > 1:3720867/1‑71 (MQ=255) cAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGAcgcg > 1:248198/1‑71 (MQ=255) cAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGAcgc > 1:3699205/1‑70 (MQ=255) cAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGAcg > 1:5087612/1‑69 (MQ=255) tgtaCTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGAcgc < 1:4562786/61‑1 (MQ=255) tGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGtt < 1:2211737/71‑2 (MQ=255) tGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTg < 1:1541262/71‑1 (MQ=255) aCTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATg < 1:4317285/71‑1 (MQ=255) aCTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATg < 1:3819659/71‑1 (MQ=255) aCTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATg < 1:2133124/71‑1 (MQ=255) aCTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATg < 1:1747669/71‑1 (MQ=255) aCTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATg < 1:3661095/71‑1 (MQ=255) cATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGAc > 1:726518/1‑70 (MQ=255) cATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACg > 1:2423087/1‑71 (MQ=255) ccGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGa < 1:933279/70‑1 (MQ=255) ccGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGa < 1:2422454/70‑1 (MQ=255) ccGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGa < 1:749094/70‑1 (MQ=255) ccGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGa < 1:748009/70‑1 (MQ=255) tGATCACCGGCTCGATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGtc > 1:3765659/1‑70 (MQ=255) tGATCACCGGCTCGATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGtc > 1:627910/1‑70 (MQ=255) tGATCACCGGCTCGATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGtc > 1:5139499/1‑70 (MQ=255) tGATCACCGGCTCGATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGtc > 1:4654633/1‑70 (MQ=255) gATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTgg > 1:2511946/1‑71 (MQ=255) cACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTgg > 1:509576/1‑50 (MQ=255) cACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTgg > 1:5088838/1‑50 (MQ=255) cACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTgg > 1:542705/1‑50 (MQ=255) ccGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAgc < 1:1572932/71‑1 (MQ=255) ccGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAgc < 1:1564036/71‑1 (MQ=255) cggctcgATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGTCGGCAgcg < 1:4421560/68‑1 (MQ=255) cggctcgATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGTCGGCAgcg < 1:5072468/68‑1 (MQ=255) cggctcgATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGTCGGCAgcg < 1:5096278/68‑1 (MQ=255) ccTCTATTCTGGCGAAGAAACTAGCGGAAGGACTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAgcggc > 1:1677587/1‑71 (MQ=255) tctATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:5198074/1‑57 (MQ=255) tATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGt < 1:3360109/42‑1 (MQ=255) tATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGt < 1:1788533/42‑1 (MQ=255) tATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGt < 1:1698747/42‑1 (MQ=255) tATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGt < 1:3353852/42‑1 (MQ=255) tATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGt > 1:3394182/1‑71 (MQ=255) tATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGt > 1:3431812/1‑71 (MQ=255) ttCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGa < 1:3111659/46‑1 (MQ=255) ttCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGa < 1:4703971/46‑1 (MQ=255) ttCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGa < 1:2363989/46‑1 (MQ=255) ttCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGtt < 1:4676491/70‑1 (MQ=255) tCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTgg > 1:752776/1‑38 (MQ=255) tCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTgg > 1:3567664/1‑38 (MQ=255) cTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa > 1:3790149/1‑70 (MQ=255) gCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTAt < 1:288183/68‑1 (MQ=255) gCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATg < 1:3369350/69‑1 (MQ=255) cGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa > 1:1118185/1‑66 (MQ=255) cGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa > 1:1580525/1‑66 (MQ=255) cGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa > 1:2190962/1‑66 (MQ=255) cGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa > 1:4314104/1‑66 (MQ=255) cGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGAGCGTTTa > 1:1894959/1‑66 (MQ=255) gaagaaACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa < 1:3338671/65‑1 (MQ=255) gaagaaACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa < 1:3469375/65‑1 (MQ=255) aaaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGtt < 1:1211473/59‑1 (MQ=255) aaaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGtt < 1:414006/59‑1 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:342745/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:2364113/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:3793051/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:3816621/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:1272662/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:443967/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:4293125/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:1756997/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:1840212/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTAc > 1:2660731/1‑71 (MQ=255) aCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTAc > 1:4251476/1‑70 (MQ=255) aCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTAc > 1:1433811/1‑70 (MQ=255) cTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGttt < 1:428748/57‑1 (MQ=255) cTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGttt < 1:1124774/57‑1 (MQ=255) cTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGttt < 1:2411933/57‑1 (MQ=255) cTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGa < 1:3479313/71‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTTGTGATGGACGTg < 1:4682206/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:1561257/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:4688227/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:2613051/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:477423/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:1115289/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:2994071/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:497479/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:5025086/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:50677/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:3367068/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:2117419/35‑1 (MQ=255) ttGCGGAAGGTCTGGACGCGCTGGTGATGGACGTg < 1:2817060/35‑1 (MQ=255) cTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGATCTCTCTGAAGc > 1:4144843/1‑71 (MQ=255) cTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGc > 1:4575651/1‑71 (MQ=255) cTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGc > 1:4678020/1‑71 (MQ=255) tGGACGCGCGGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGcc < 1:2635410/49‑1 (MQ=255) gACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGttt < 1:4017494/42‑1 (MQ=255) gACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGCCCTACGAACTCTCTGAAGCCCt > 1:1654844/1‑71 (MQ=255) gACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAc > 1:3747509/1‑58 (MQ=255) gACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCt > 1:682359/1‑71 (MQ=255) gACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCt > 1:4248173/1‑71 (MQ=255) cgcgCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAc > 1:1480380/1‑56 (MQ=255) cgcgCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAc > 1:2877567/1‑56 (MQ=255) cgcgCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAc > 1:4830980/1‑56 (MQ=255) cgcgCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAc > 1:3056555/1‑56 (MQ=255) | CCGCAACCGTGGACTCCATCCCGCTGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCT > Exported/2965039‑2965177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |