| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,965,130 | A→G | 11.1% | K204K (AAA→AAG) | deoA → | thymidine phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,965,130 | 0 | A | G | 11.1% | 170.5 / 9.9 | 63 | K204K (AAA→AAG) | deoA | thymidine phosphorylase |
| Reads supporting (aligned to +/- strand): ref base A (26/30); new base G (4/3); total (30/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGT > Exported/2965063‑2965198 | tGATCACCGGCTCGATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGtc > 1:3765659/1‑70 (MQ=255)tGATCACCGGCTCGATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGtc > 1:627910/1‑70 (MQ=255)tGATCACCGGCTCGATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGtc > 1:4654633/1‑70 (MQ=255)tGATCACCGGCTCGATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGtc > 1:5139499/1‑70 (MQ=255) gATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTgg > 1:2511946/1‑71 (MQ=255) ccGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAgc < 1:1564036/71‑1 (MQ=255) ccGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAgc < 1:1572932/71‑1 (MQ=255) cggctcgATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGTCGGCAgcg < 1:4421560/68‑1 (MQ=255) cggctcgATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGTCGGCAgcg < 1:5096278/68‑1 (MQ=255) cggctcgATCCTGTCCAAGAAGCTGTCGGCGGGCCTGGATGCGCTGGTGATGGACGTGAAGGTCGGCAgcg < 1:5072468/68‑1 (MQ=255) ccTCTATTCTGGCGAAGAAACTAGCGGAAGGACTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAgcggc > 1:1677587/1‑71 (MQ=255) tctATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:5198074/1‑57 (MQ=255) tATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGt > 1:3431812/1‑71 (MQ=255) tATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGt > 1:3394182/1‑71 (MQ=255) ttCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGtt < 1:4676491/70‑1 (MQ=255) cTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa > 1:3790149/1‑70 (MQ=255) gCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTAt < 1:288183/68‑1 (MQ=255) gCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATg < 1:3369350/69‑1 (MQ=255) cGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa > 1:1580525/1‑66 (MQ=255) cGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa > 1:4314104/1‑66 (MQ=255) cGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa > 1:2190962/1‑66 (MQ=255) cGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa > 1:1118185/1‑66 (MQ=255) cGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGAGCGTTTa > 1:1894959/1‑66 (MQ=255) gaagaaACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa < 1:3338671/65‑1 (MQ=255) gaagaaACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTa < 1:3469375/65‑1 (MQ=255) aaaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGtt < 1:1211473/59‑1 (MQ=255) aaaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGtt < 1:414006/59‑1 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:1272662/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:3793051/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:3816621/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:1756997/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:2364113/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:4293125/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:342745/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:443967/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGaaa > 1:1840212/1‑41 (MQ=255) aaCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTAc > 1:2660731/1‑71 (MQ=255) aCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTAc > 1:4251476/1‑70 (MQ=255) aCTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTAc > 1:1433811/1‑70 (MQ=255) cTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGttt < 1:428748/57‑1 (MQ=255) cTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGttt < 1:1124774/57‑1 (MQ=255) cTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGttt < 1:2411933/57‑1 (MQ=255) cTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGa < 1:3479313/71‑1 (MQ=255) cTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGATCTCTCTGAAGc > 1:4144843/1‑71 (MQ=255) cTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGc > 1:4678020/1‑71 (MQ=255) cTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGc > 1:4575651/1‑71 (MQ=255) tGGACGCGCGGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGcc < 1:2635410/49‑1 (MQ=255) gACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGttt < 1:4017494/42‑1 (MQ=255) gACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGCCCTACGAACTCTCTGAAGCCCt > 1:1654844/1‑71 (MQ=255) gACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAc > 1:3747509/1‑58 (MQ=255) gACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCt > 1:682359/1‑71 (MQ=255) gACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCt > 1:4248173/1‑71 (MQ=255) cgcgCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAc > 1:2877567/1‑56 (MQ=255) cgcgCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAc > 1:4830980/1‑56 (MQ=255) cgcgCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAc > 1:1480380/1‑56 (MQ=255) cgcgCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAc > 1:3056555/1‑56 (MQ=255) gcTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCg < 1:4691202/71‑1 (MQ=255) ctgTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGaa < 1:2709613/69‑1 (MQ=255) tGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATg < 1:3075162/35‑1 (MQ=255) tGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCg < 1:2928199/38‑1 (MQ=255) tGATGGACGTGAAAGAGGGTAGCGGCGCGTTTATGCCg < 1:1760826/38‑1 (MQ=255) aTGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCg < 1:3047542/36‑1 (MQ=255) aTGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCg < 1:2001755/36‑1 (MQ=255) aTGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCg < 1:1976977/36‑1 (MQ=255) aTGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCg < 1:4479141/36‑1 (MQ=255) aTGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCg < 1:1241880/36‑1 (MQ=255) aTGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCg < 1:1918556/36‑1 (MQ=255) aTGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCg < 1:3598476/36‑1 (MQ=255) aTGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCg < 1:8531/36‑1 (MQ=255) aTGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGAt < 1:4211468/71‑1 (MQ=255) ggACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGAttg > 1:2020882/1‑71 (MQ=255) ggACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGAtt > 1:1972365/1‑70 (MQ=255) tGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAAct < 1:3839671/40‑1 (MQ=255) aaaGTGGGTAGCGGCGCGTTTATGCCGACCTACGaa > 1:3777475/1‑36 (MQ=255) aaaGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGt > 1:1671103/1‑71 (MQ=255) aaaGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGt < 1:5174404/71‑1 (MQ=255) aaaGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGt < 1:2119485/71‑1 (MQ=255) aaGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGt < 1:961750/70‑1 (MQ=255) | TGATCACCGCCTCTATTCTGGCGAAGAAACTTGCGGAAGGTCTGGACGCGCTGGTGATGGACGTGAAAGTGGGTAGCGGCGCGTTTATGCCGACCTACGAACTCTCTGAAGCCCTTGCCGAAGCGATTGTTGGCGT > Exported/2965063‑2965198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |