| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 713380 = | 34 (0.680) | 52 (1.130) | 37/94 | NT | 63.3% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | AP009048 | = 4125338 | 29 (0.630) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC < AP009048/4125338‑4125269 GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:300897/70‑1 AGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTT > 1:2699948/1‑71 CTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTT < 1:1361344/71‑1 CTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:3010740/61‑1 GTAGAGTTCATCATCAACTTCAATAGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA > 1:632646/1‑61 TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCG < 1:99713/71‑1 TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCG < 1:1626805/71‑1 TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTT < 1:4141296/69‑1 AGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC > 1:2413532/1‑71 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCG < 1:4454403/71‑1 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC < 1:3622268/70‑1 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT > 1:1048446/1‑65 AGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGG < 1:1405294/71‑1 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGt < 1:1052163/69‑2 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGGCTTAGCTGAATTATTTT < 1:1566484/62‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:1771449/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA > 1:2101154/1‑70 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA > 1:1856581/1‑70 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:4527961/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:249279/70‑1 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT > 1:4145231/1‑56 CATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC > 1:559606/1‑62 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACG < 1:2861906/71‑1 CAACTTCAATCGTTTTCATCTTAATCCAGTGCAGCGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:2627397/65‑1 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC < 1:1994727/70‑1 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC < 1:141621/70‑1 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT < 1:1148419/45‑1 TTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTC > 1:3545483/1‑53 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTG < 1:4143455/70‑1 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG > 1:2446264/1‑58 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTT > 1:3151213/1‑47 AATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGT < 1:1757810/71‑1 AATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGT < 1:3638232/71‑1 ATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:1740729/37‑1 CGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:245619/55‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT < 1:1003140/71‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG < 1:3892385/70‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG < 1:3439299/70‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG < 1:349544/70‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA > 1:2359504/1‑59 TTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG < 1:431329/69‑1 TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTT > 1:835267/1‑41 CATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:3041808/1‑69 ATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAA < 1:4223820/70‑1 TAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC > 1:2159816/1‑50 AATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAG < 1:1806268/70‑1 AATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCG > 1:2387697/1‑36 ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC < 1:3382843/70‑1 ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC < 1:2318786/70‑1 ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC < 1:3780530/67‑1 CAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTT < 1:753494/71‑1 AGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTC < 1:4310501/71‑1 AGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA > 1:4588514/1‑43 GCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC < 1:1344326/41‑1 CAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC > 1:3346223/1‑37 AGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC < 1:3507058/58‑1 GTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG < 1:3959625/62‑1 GTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACT < 1:237014/39‑1 TGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:3242383/54‑1 CTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTT > 1:419368/1‑71 TAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT > 1:4395300/1‑70 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTT < 1:3658980/70‑1 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT < 1:2911606/56‑1 TGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT < 1:1721534/66‑1 TGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCA > 1:4190234/1‑48 GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTG > 1:1766209/1‑71 GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > 1:2236747/1‑52 AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTG < 1:1726336/70‑1 AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGT < 1:3938842/69‑1 ATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTG < 1:3174088/71‑1 ATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGT < 1:2045864/70‑1 TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC > 1:1304319/1‑71 GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC < AP009048/4125338‑4125269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |