| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 971569 | 63 (1.260) | 3 (0.070) | 3/90 | NT | 4.5% | coding (296/747 nt) | kdsB | 3‑deoxy‑manno‑octulosonate cytidylyltransferase |
| ? | AP009048 | = 971584 | 73 (1.660) | coding (311/747 nt) | kdsB | 3‑deoxy‑manno‑octulosonate cytidylyltransferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGGAACAGAACGTCTGGCGGAAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTGCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/971494‑971569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagggATCATCGGTTCATCACCCTGCACATTAACGATCACCGTGTCGTCGCTGAATGCGCATTTTTCGACAACTT < AP009048/971584‑971515 CAGGAACAGAACGTCTGGCGGAAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTG > 1:1197563/1‑71 AGGAACAGAACGTCTGGCGGAAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTG > 1:857596/1‑70 AGGAACAGAACGTCTGGCGGAAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTG > 1:4494911/1‑70 AGGAACAGAACGTCTGGCGGAAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTG > 1:4451652/1‑70 AGGAACAGAACGTCTGGCGGAAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTG > 1:4244636/1‑70 AGGAACAGAACGTCTGGCGGAAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTG > 1:2247915/1‑70 GAACAGAACGTCTGGCGGAAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTGCAG > 1:933738/1‑71 GGCGGAAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTG > 1:4223344/1‑55 AAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTGCAG > 1:1820921/1‑53 CGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTGCAGGGATCATCGGTTCATCACCCTGCA < 1:2175102/70‑1 AAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTGCAGG > 1:1514142/1‑43 CATTCAGCGACGACACGGTGATCGTTAATGTGCAGGGATCATCGGTTCAT < 1:3964136/50‑1 GCGACGACACGGTGATCGTTAATGTGCAGGGATCATCGGTTCATCACC < 1:4426214/48‑1 CAGGGATCATCGGTTCATCACCCTGCACATTAACGATCACCGTGTCGTCGCTGAATGCGCATTTTTCGACA < 1:86008/71‑1 AGGGATCATCGGTTCATCACCCTGCACATTAACGATCACCGTGTCGTCGCTGAATGCGCATTTTTCGAC < 1:1902843/69‑1 GGATCATCGGTTCATCACCCTGCACATTAACGATCACCGTGTCGTCGCTGAATGCGCATTTTTCGACAACT < 1:1174618/71‑1 GGATCATCGGTTCATCACCCTGCACATTAACGATCACCGTGTCG < 1:2994596/44‑1 GATCATCGGTTCATCACCCTGCACATTAACGATCACCGTGTCGTCGCTGAATGCGCATTTTTCGACAACTT < 1:2830998/71‑1 GATCATCGGTTCATCACCCTGCACATTAACGATCACCGTGTCGTCGCTGAATGCGCATTTTTCGACAACTT < 1:1471889/71‑1 CAGGAACAGAACGTCTGGCGGAAGTTGTCGAAAAATGCGCATTCAGCGACGACACGGTGATCGTTAATGTGCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/971494‑971569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagggATCATCGGTTCATCACCCTGCACATTAACGATCACCGTGTCGTCGCTGAATGCGCATTTTTCGACAACTT < AP009048/971584‑971515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |