New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 1153172	27 (0.540)	3 (0.060)	3/98	NT	9.2%	intergenic (+191/‑20)	fabG/acpP	3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein
	?	AP009048	= 1153204	33 (0.690)					coding (13/237 nt)	acpP	acyl carrier protein

GGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1153110‑1153172 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttCGATAGTGCTCATACTCTTAAATTTCCTATCAAAACTCGCTTTCGCGAT  <  AP009048/1153204‑1153156                                                                                                                  GGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTT                                                    <  1:1543513/62‑1                         CATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTCGATAGTGCTCATACTCTTAAATTTCCTATCA                   <  1:3675644/71‑1                          ATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTCGATAGTGCTCATACTCTTAAATTTCCTATCAA                  <  1:2564371/71‑1                                                     AAAGCGAGTTTCGATAGTGCTCATACTCTTAAATTTCCTATCAAAA                >  1:3912836/1‑46                                                              TTCGATAGTGCTCATACTCTTAAATTTCCTATCAAAACTCGCTTTC       <  1:1162776/46‑1                                                               TCGATAGTGCTCATACTCTTAAATTTCCTATCAAAACTCGCTTTCGCGAT  >  1:1191296/1‑50                                                                                                                  GGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1153110‑1153172 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttCGATAGTGCTCATACTCTTAAATTTCCTATCAAAACTCGCTTTCGCGAT  <  AP009048/1153204‑1153156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.