New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	1481996 =	31 (0.620)	11 (0.230) +AT	10/98	NT	38.2%	coding (1145/1758 nt)	ynbC	predicted hydrolase
	?	AP009048	2564137 =	6 (0.120)					coding (1404/1404 nt)	eutA	reactivating factor for ethanolamine ammonia lyase

GCGCTGGCGAATACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1482012‑1481996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATG  >  AP009048/2564137‑2564206                  ||                                                                       cCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCA                    <  1:374665/70‑1  CGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAT                          >  1:800707/1‑64  CGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTC                                               <  1:4066566/43‑1  CGCTGGCGAATACC‑CATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAA                  <  1:1922043/71‑1   GCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCA                    >  1:731145/1‑69    CTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTT                                                >  1:3429793/1‑40     TGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAA                  <  1:111552/69‑1       GCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAG               <  1:1036551/70‑1       GCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAA                >  1:1437388/1‑69        CGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAA                <  1:2329770/68‑1           ATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGA              >  1:2624918/1‑67                GCATTCAGGAAGGAAATGCGAGTGATTTCACTGTCACCGGCACAACCGATC                         >  1:173415/1‑51                 CATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAA    >  1:1381808/1‑71                 CATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATC                         >  1:1278684/1‑50                 CATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACC                             >  1:2798614/1‑46                  ATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAAT   <  1:2407845/71‑1                  ATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAAGCGTACCAAT   <  1:3393734/71‑1                   TTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATG  <  1:4587875/71‑1                  ||                                                                       GCGCTGGCGAATACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1482012‑1481996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATG  >  AP009048/2564137‑2564206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.