| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2173564 | NA (NA) | 97 (1.980) | 53/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | AP009048 | 3920276 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 132 total aligned reads displayed.
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2173497‑2173564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > AP009048/3920276‑3920344 CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA > 1:3205186/1‑71CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA > 1:613879/1‑69 TCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA > 1:1532776/1‑70 CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCTTATTACGTGGGTAGGATCACACA > 1:2810806/1‑71 CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACt > 1:4022444/1‑70 CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACt > 1:3119395/1‑70 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACtt > 1:382816/1‑69 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT > 1:4110192/1‑71 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACAC < 1:3712754/69‑1 GTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATC < 1:4264025/71‑1 TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCg < 1:1038408/71‑2 TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:4551577/64‑1 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCggt < 1:1551022/71‑4 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCgg < 1:4402509/70‑3 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT > 1:2805375/1‑70 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT > 1:4129088/1‑70 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT < 1:3508948/70‑1 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:488889/62‑1 GGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT > 1:3788191/1‑69 GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:4006472/60‑1 GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:516387/60‑1 GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTCGGTAGGATCA < 1:1700895/60‑1 ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTC < 1:740947/64‑1 ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCA < 1:1732468/71‑1 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCAT > 1:3677463/1‑71 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACAC > 1:2831660/1‑57 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCG > 1:2058482/1‑71 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATC > 1:3893615/1‑70 AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTC < 1:2364031/71‑1 AAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT > 1:2597158/1‑69 ACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGG < 1:2019941/71‑1 ACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAC > 1:4286341/1‑48 CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG > 1:3315629/1‑69 CAAGAACATCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:1744015/46‑1 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT > 1:4066135/1‑71 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT < 1:3942901/71‑1 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:4585034/67‑1 GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAG < 1:2515139/69‑1 GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA > 1:4214488/1‑53 GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA > 1:1311183/1‑53 CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCgg < 1:3018360/48‑3 CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT < 1:1577283/48‑1 CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGA < 1:583716/71‑1 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:2940206/38‑1 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:3650949/38‑1 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:4309821/38‑1 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAG > 1:1906961/1‑71 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT > 1:4008473/1‑56 CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA < 1:3011230/45‑1 AGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGA < 1:3359900/70‑1 AGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG > 1:624467/1‑69 AGGCCTGTGTCCATATTACGTGGGTAGGATCACAC > 1:2354019/1‑35 GGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAA < 1:3034041/70‑1 GCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG > 1:1645368/1‑53 GCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG > 1:1813416/1‑53 CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCT > 1:1635927/1‑71 CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCC > 1:4449521/1‑64 CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTG < 1:4498476/56‑1 CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTG < 1:620353/56‑1 CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCA > 1:3113761/1‑50 CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAG < 1:717924/39‑1 TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTT < 1:2927068/70‑1 TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGA > 1:2366174/1‑57 GTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGT > 1:3742058/1‑71 TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGT > 1:3218315/1‑70 TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGT > 1:820274/1‑70 CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAG > 1:574061/1‑71 CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAG > 1:1124948/1‑71 CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAG > 1:159033/1‑71 CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCA < 1:1976646/70‑1 CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAA > 1:1627197/1‑54 ATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGC > 1:705835/1‑71 ATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGC > 1:4024209/1‑61 TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCG > 1:1838475/1‑71 TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCA < 1:3308261/68‑1 TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT < 1:3914969/39‑1 ATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGT > 1:2853251/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT < 1:291043/71‑1 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:1992193/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT < 1:110078/71‑1 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCA > 1:2042982/1‑66 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTT > 1:2398294/1‑62 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGAGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:953739/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCA > 1:3096015/1‑39 TACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTT > 1:4223527/1‑61 ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:128307/70‑1 CGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGA < 1:478056/70‑1 CGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:215238/69‑1 GTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:4384156/68‑1 GGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCA > 1:2746057/1‑71 GGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG > 1:776628/1‑48 GGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG > 1:4389043/1‑48 GTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCAGAAGCCTTTGTCAGCGTTGAACCATT < 1:103468/71‑1 TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAA > 1:3565404/1‑65 AGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT > 1:2118742/1‑70 GGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT < 1:1328699/36‑1 GGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT < 1:3682417/36‑1 GGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT > 1:1507318/1‑36 TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > 1:1169149/1‑71 TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGC > 1:2994217/1‑44 CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2173497‑2173564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > AP009048/3920276‑3920344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |