| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2430401 | 32 (0.640) | 4 (0.090) | 3/88 | NT | 9.7% | coding (279/717 nt) | hisM | histidine/lysine/arginine/ornithine transporter subunit |
| ? | AP009048 | = 2430411 | 47 (1.090) | coding (269/717 nt) | hisM | histidine/lysine/arginine/ornithine transporter subunit | |||||
GCGCAGGTGTTAAGCGTCAGCGCCAGCACGGTACAGTTCAGGCCACTGCGGAAGAAAGCGTTAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2430336‑2430401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaaggGAACCGAATTCCTTAACGCTTTCTTCCGCAGTGGCCTGAACTGTACCGTGCTGGCGCTGACGCTTAACA < AP009048/2430411‑2430343 GCGCAGGTGTTAAGCGTCAGCGCCAGCACGGTACAGTTCAGGCCACTGCGGAAGAAAGCGTTAAG < 1:2633010/65‑1 CGTCAGCGCCAGCACGGTACAGTTCAGGCCACTGCGGAAGAAAGCGTTAAGGGAACCGAATTCCTTA > 1:3020127/1‑67 GTCAGCGCCAGCACGGTACAGTTCAGGCCACTGCGGAAGAAAGCGTTAAGG < 1:2121083/51‑1 AGCGCCAGCACGGTACAGTTCAGGCCACTGCGGAAGAAAGCGTTAA > 1:117158/1‑46 GCGCCAGCACGGTACAGTTCAGGCCACTGCGGAAGAAAGCGTTAAGGGAACCGAATTCCTTA < 1:1468761/62‑1 GCACGGTACAGTTCAGGCCACTGCGGAAGAAAGCGTTAAGGGAACCGAATTCCTTAAC > 1:1805427/1‑58 CACGGTACAGTTCAGGCCACTGCGGAAGAAAGCGTTAAGG < 1:2204451/40‑1 ACGGAACAGTTCAGGCCACTGCGGAAGAAAGCGTTAA > 1:1084136/1‑37 CCACTGCGGAAGAAAGCGTTAAGGGAACCGAATTCCTTA < 1:4603732/39‑1 GTTAAGGGAACCGAATTCCTTAACGCTTTCTTCCGCAGTGGCCTGAACTGTACCGTGCTGGCGCTGACGCT > 1:211649/1‑71 GTTAAGGGAACCGAATTCCTTAACGCTTTCTTCCGCAGTGGCCTGAACTGTACCGT < 1:2690145/56‑1 TAAGGGAACCGAATTCCTTAACGCTTTCTTCCGCAGTGGCCTGAACTGTACCGTGCTGGCGCTGACGCTT > 1:632485/1‑70 AAGGGAACCGAATTCCTTAACGCTTTCTTCCGCAGTGGCCTGAA > 1:1269033/1‑44 AGGGAACCGAATTCCTTAACGCTTTCTTCCGCAGTGGCCTGAACTGTACCGTGCTG < 1:2761576/56‑1 AGGGAACCGAATTCCTTAACGCTTTCTTCCGCAGTGGCCTGAAC > 1:1106266/1‑44 GGGAACCGATTTCCTTAACGCTTTCTTCCGCAGTGGCCTGAACTGTACCGTGCTGGCGCTGACGCTTAACA < 1:37995/71‑1 GGGAACCGAATTCCTTAACGCTTTCTTCCGCAGTGGCCTGAACTGTACCGTGCTGGCGCTGACGCTTAACA > 1:1042076/1‑71 GCGCAGGTGTTAAGCGTCAGCGCCAGCACGGTACAGTTCAGGCCACTGCGGAAGAAAGCGTTAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2430336‑2430401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaaggGAACCGAATTCCTTAACGCTTTCTTCCGCAGTGGCCTGAACTGTACCGTGCTGGCGCTGACGCTTAACA < AP009048/2430411‑2430343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |