| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3361913 | 87 (1.740) | 3 (0.070) | 3/88 | NT | 3.7% | intergenic (+118/‑54) | gltF/yhcA | periplasmic protein/predicted periplasmic chaperone protein |
| ? | AP009048 | = 3361920 | 83 (1.930) | intergenic (+125/‑47) | gltF/yhcA | periplasmic protein/predicted periplasmic chaperone protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATAACTCGGACAGATTATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3361841‑3361913‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacatatTGTTAATATATGTTATGCACTGTTTGCGATGAGATTGATTAAGACAGACCATGTCATAGGGCATAATCT < AP009048/3361920‑3361852 ATAACTCGGACAGATTATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACA > 1:2805827/1‑70 TAACTCGGACAGATTATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACATA < 1:2450757/71‑1 TAACTCGGACAGATTATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACA < 1:952147/69‑1 TAACTCGGACAGATTATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACA < 1:3215975/69‑1 TAACTCGGACAGATTATGCCCTATGACATGGGCTGTCTTAATCAATCTCATCGCAAACAGTGCTTAACATA > 1:2456383/1‑71 TCGGACAGATTATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACATATTGT > 1:3611637/1‑71 CGGACAGATTATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAAC < 1:2171973/63‑1 CGGACAGATTATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAAC < 1:3727285/63‑1 GGACAGATTATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACATAT < 1:709529/66‑1 ATTATGACCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAA < 1:552755/55‑1 TATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACATAT < 1:343116/58‑1 ATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACATATTGTTAATATATGT < 1:2470122/70‑1 TGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACATATTGTTAATATATGTT < 1:3211602/70‑1 CTCATCGCAAACAGTGCATAACATATTGTTAATATATGTTA > 1:1564235/1‑41 ACATATTGTTAATATATGTTATGCACTGTTTGCGATGAGATTGATTAAGACAGACCATGTCATAGGGCATA < 1:4048242/71‑1 ACATATTGTTAATATATGTTATGCACTGTTTGCGATGAGATTGATTAAGACAGACCATGTCATAGGGCAT > 1:3609765/1‑70 ACATATTGTTAATATATGTTATGCACTGTTTGCGATGAGATTGATTAAGACAGACCATGTCATAGGGCAT > 1:4482390/1‑70 CATATTGTTAATATATGTTATGCACTGTTTGCGATGAGATTGATTGAGACAGACCATGTCATAGGGCATAA > 1:1225424/1‑71 ATATTGTTAATATATGTTATGCACTGTTTGCGATGAGATTGATTAA > 1:2846865/1‑46 TATTGTTAATATATGTTATGCACTGTTTGCGATGAGATTGATTAA > 1:4570064/1‑45 ATTGTTAATATATGTTATGCACTGTTTGCGATGAGAT > 1:1388053/1‑37 TTGTTAATATATGTTATGCACTGTTTGCGATGAGATTGATTAAGACAGACCATGTCATAGGGCATAATCT < 1:3911804/70‑1 TTGTTAATATATGTTATGCACTGTTTGCGATGAGATTGATTAAGACAGACCATGTCATAGGGCATAATCT < 1:4261214/70‑1 ATAACTCGGACAGATTATGCCCTATGACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3361841‑3361913‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacatatTGTTAATATATGTTATGCACTGTTTGCGATGAGATTGATTAAGACAGACCATGTCATAGGGCATAATCT < AP009048/3361920‑3361852 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |