| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3782731 = | 64 (1.280) | 3 (0.070) | 3/90 | NT | 4.9% | coding (721/1494 nt) | yidJ | predicted sulfatase/phosphatase |
| ? | AP009048 | 3782753 = | 61 (1.380) | coding (743/1494 nt) | yidJ | predicted sulfatase/phosphatase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3782777‑3782731‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaccATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAAC > AP009048/3782753‑3782819 TCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCATCAC > 1:1199804/1‑46 ATGGTGATAAAGCCCGTCATCACCATCCGCTCTATTTTGCCTGTAATGA < 1:2148841/49‑1 GTGATAAAGCCCGTCATCACCATCCGCTCTATTTTGCCTGTAATGACT < 1:473062/48‑1 TGATAAAGCCCGTCATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGG > 1:2374497/1‑71 ATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTT < 1:4300729/70‑1 ATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTT < 1:957596/70‑1 ATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTT < 1:99399/70‑1 TCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTA < 1:4273959/70‑1 TCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCG < 1:2196006/50‑1 TCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCA > 1:3297687/1‑45 CACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAA > 1:208159/1‑70 CACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGAT > 1:2322229/1‑39 ACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAAC > 1:871492/1‑70 ACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGAC > 1:3240625/1‑51 CATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAA < 1:2119740/42‑1 CATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAA < 1:2125200/42‑1 TCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3782777‑3782731‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaccATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAAC > AP009048/3782753‑3782819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |