| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4010055 | 66 (1.320) | 3 (0.070) | 3/94 | NT | 4.7% | coding (243/1068 nt) | yhiI | predicted HlyD family secretion protein |
| ? | AP009048 | = 4010069 | 62 (1.350) | coding (257/1068 nt) | yhiI | predicted HlyD family secretion protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATCGACACCATTCTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4009983‑4010055‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACAAACTTGCCTTCTTT < AP009048/4010069‑4010002 TATCGACACCATTCTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTC < 1:1939338/71‑1TATCGACACCATTCTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTC > 1:3451081/1‑71 ATCGACACCATTCTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTCG > 1:2990330/1‑71 ATCGACACCATTCTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTCG > 1:4016055/1‑71 CGACACCATTCTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACT > 1:1120194/1‑67 CGACACCATTCTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACT > 1:4112326/1‑67 ACACCATTCTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTC < 1:2529860/66‑1 ACACCATTCTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTC < 1:4117954/66‑1 CTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTCGC > 1:322515/1‑60 TGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTCGC < 1:922068/56‑1 AGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTCGCTGTTCCTGCAACACGCGAG < 1:2879712/71‑1 GAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTCGCTGTTCCTGCAACACGCGAGT < 1:3956914/71‑1 CAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTCGCTGTTCCTGCAACACGCGA > 1:934834/1‑64 TCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTC < 1:4025482/35‑1 TCGCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACAAACTTGCCTTCTT > 1:209849/1‑71 CGCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCAC > 1:1300649/1‑46 GCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACAAACTTGCCTTCTTT < 1:633202/70‑1 GCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACAAACTTGCCTTCTTT < 1:1988291/70‑1 GCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACAAACTTGCCTTCTTT < 1:964180/70‑1 GCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTC > 1:3440502/1‑49 TATCGACACCATTCTGGTGAAAGAAGGCAAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4009983‑4010055‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACAAACTTGCCTTCTTT < AP009048/4010069‑4010002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |