| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4458808 = | 84 (1.680) | 3 (0.070) | 3/94 | NT | 4.3% | coding (546/996 nt) | yjfF | predicted sugar transporter subunit |
| ? | AP009048 | 4458830 = | 56 (1.220) | coding (568/996 nt) | yjfF | predicted sugar transporter subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTGGAAATCCCCATCAGATTCGCCGACGTTGCGTTGCCGCCAATGGCGTATACCTGATTACCAAAACGGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4458880‑4458808‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtaTACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCA > AP009048/4458830‑4458899 AGTGGAAATCCCCATCAGATTCGCCGACGTTGCGTTGCCGCCAATGGCGTATACCTGATTACCAAAACGGG < 1:3777125/71‑1 TGGAAATCCCCATCAGATTCGCCGACGTTGCGTTGCCGCCAATGGCGTATACCTGATTACCAAAACGGGTA < 1:2133646/71‑1 TGGAAATCCCCATCAGATTCGCCGACGTTGCGTTGCCGCCAATGGCGTATACCTGATTACCAAAACGGGT < 1:2286522/70‑1 GAAATCCCCATCAGATTCGCCGACGTTGCGTTGCCGCCAATGGCGTATACCTGATTACCAAAACGGGT < 1:3509691/68‑1 CATCAGATTCGCCGACGTTGCGTTGCCGCCAATGGCGTATACCTGATTACCAAAACGGGTA < 1:419843/61‑1 TCAGATTCGCCGACGTTGCGTTGCCGCCAATGTCGTATACCTGATTACCAAAACGG > 1:521515/1‑56 ACGTTGCGTTGCCGCCAATGGCGTATACCTGATTACCAAAACGGGTA > 1:3218059/1‑47 TACCTGATTACCAAAACGGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCA > 1:4006645/1‑71 CTGATTACCAAAACGGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTT > 1:4290610/1‑65 GATTACCAAAACGGGTATACGCCATTGGCGGCAACGCAACGTCGGCGAA > 1:3199153/1‑49 tTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTA < 1:4587571/66‑1 GTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATTGGGAT < 1:3787023/47‑1 GTATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGAT < 1:3673391/47‑1 TATACGCCATTGGCGGCAACGCAACGTCGGCGATTCTGA < 1:2600417/39‑1 ATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCA > 1:3772352/1‑71 ATACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCA > 1:4490725/1‑71 AGTGGAAATCCCCATCAGATTCGCCGACGTTGCGTTGCCGCCAATGGCGTATACCTGATTACCAAAACGGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4458880‑4458808‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtaTACGCCATTGGCGGCAACGCAACGTCGGCGAATCTGATGGGGATTTCCACTCGCAGCACCACTATTCGCA > AP009048/4458830‑4458899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |