| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4481819 = | 44 (0.880) | 3 (0.070) | 3/92 | NT | 8.3% | coding (1703/1815 nt) | yjgL | hypothetical protein |
| ? | AP009048 | 4481841 = | 27 (0.600) | coding (1725/1815 nt) | yjgL | hypothetical protein | |||||
CTATTGCTATACGTAAATTTTCCGGTGGATTTAGTTTATTTAAACGCTGTTCATTAATATATGGTAATACATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4481893‑4481819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attaaTGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGG > AP009048/4481841‑4481907 CTATTGCTATACGTAAATTTTCCGGTGGATTTAGTTTATTTAAACGCTGTTCATTAATATATGGTAATACA > 1:3045683/1‑71CTATTGCTATACGTAAATTTTCCGGTGGATTTAGTTTATTTAAACGCTGTTCATTAATATATGGTAATACA > 1:3270412/1‑71 TTGCTATACGTAAATTTTCCGGTGGATTTAGTTTATTTAAACGCTGTTCATTAATATATGGTAATACATTA < 1:3111174/71‑1 TTGCTATACGTAAATTTTCCGGTGGATTTAGTTTATTTAAACGCTGTTCATTAATATATGGTAATACATT > 1:2057173/1‑70 TCATTAATATATGGTAATACATTAATGAACAGCGTTTAAATAAACTA < 1:1785181/47‑1 CATTAATATATGGTAATACATTAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACG < 1:1588810/66‑1 AATATATGGTAATACATTAATGAACAGCGTTTAAATAAAC > 1:17533/1‑40 TTAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGG < 1:104236/71‑1 TTAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTG < 1:558098/70‑1 TTAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAG < 1:3436398/57‑1 CTATTGCTATACGTAAATTTTCCGGTGGATTTAGTTTATTTAAACGCTGTTCATTAATATATGGTAATACATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4481893‑4481819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attaaTGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGG > AP009048/4481841‑4481907 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |