| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4541673 = | 49 (0.980) | 5 (0.110) | 3/92 | NT | 10.0% | coding (602/981 nt) | yjhS | conserved hypothetical protein |
| ? | AP009048 | 4541697 = | 46 (1.020) | coding (578/981 nt) | yjhS | conserved hypothetical protein | |||||
CTGGATGCAAGGCGAATTTGACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4541747‑4541673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgaGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCATCCAGCATGCGCCGAGG > AP009048/4541697‑4541759 CTGGATGCAAGGCGAATTTGACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGG > 1:1901714/1‑71CTGGATGCAAGGCGAATTTGACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGG > 1:1052955/1‑71CTGGATGCAAGGCGAATTTGACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGG > 1:2635489/1‑71CTGGATGCAAGGCGAATTTGACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGG > 1:770711/1‑71 GATGCAAGGCGAATTTGACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGGTTG < 1:472543/71‑1 GATGCAAGGCGAATTTGACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGGTTG < 1:829273/71‑1 ATGCAAGGCGAATTTGACTTAATGACCAGTGACTACGGGTCACACCCTCAACACTTTAATCATATGGTTGA < 1:124950/71‑1 ATGCAAGGCGAATTTGACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGGTTGA < 1:89708/71‑1 GAATTTGACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGGTTG < 1:3985633/61‑1 GACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGGTTGA < 1:4280790/56‑1 ACTACGCGTCACACCCTCAACACTTTAATCATATGGTTG < 1:623238/39‑1 GCGTCACACCCTCAACACTTTAATCATATGGTTGA > 1:3631695/1‑35 TCAACACTTTAATCATATGGTTGAGGGTGTGACGCGTA < 1:3060711/38‑1 TCAACACTTTAATCATATGGTTGAGGGTGTGACGCGTA < 1:560326/38‑1 TCAACACTTTAATAATATGGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTG > 1:476178/1‑68 AACACTTTAATCATATGGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTC > 1:980036/1‑60 AACACTTTAATCATATGGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTC > 1:979902/1‑60 TTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCATCCAGCATGCGCCGAGG > 1:1992890/1‑67 TTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCATCCAGC < 1:3799035/56‑1 TTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGC < 1:4477340/49‑1 GAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCATCCAGC < 1:4001328/54‑1 GAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCATCCAGC < 1:3996183/54‑1 GAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCATCCAGC < 1:3569788/54‑1 CTGGATGCAAGGCGAATTTGACTTAATGACCAGTGACTACGCGTCACACCCTCAACACTTTAATCATATGGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4541747‑4541673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgaGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCATCCAGCATGCGCCGAGG > AP009048/4541697‑4541759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |