| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 20390 = | NA (NA) | 9 (0.170) | 3/94 | NT | NA | coding (119/276 nt) | insA | IS1 repressor protein InsA |
| ? | AP009048 | 20407 = | NA (NA) | coding (102/276 nt) | insA | IS1 repressor protein InsA | |||||
GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/20463‑20390‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA > AP009048/20407‑20476 GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG > 1:4678859/1‑71GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG < 1:676901/71‑1GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG < 1:2039132/71‑1 GGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGG < 1:278587/71‑1 GGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC < 1:1189439/71‑1 GGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC < 1:3425426/71‑1 GGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC < 1:1916658/71‑1 GGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC < 1:2055610/71‑1 GGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGG > 1:79837/1‑70 GTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC > 1:582534/1‑67 ACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG > 1:3292310/1‑58 CAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC < 1:2761496/56‑1 AAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGG < 1:4039620/54‑1 AAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC < 1:2390851/54‑1 AAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC > 1:4000232/1‑53 GCCGGACATCAGCGCTATCTCTGCTCTCACTACCGTAAAACATGGC < 1:3257234/46‑1 CGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC < 1:1741952/44‑1 GGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG > 1:1623486/1‑41 ATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGG < 1:1971005/38‑1 ATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGG < 1:1968904/38‑1 CAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC < 1:3684613/37‑1 CAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG > 1:4596199/1‑35 AGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCA > 1:2004969/1‑37 GCGCTATCTCTGCTCTCACTGCCGTAAATCATGGCA < 1:368830/36‑1 CACTGCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCT < 1:3523564/56‑1 ctTGCCGTAAAACATGGCAAGGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCAC > 1:2767940/3‑70 ctTGCCGTAAAACATGGCAAGGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGACGTTACGCAC > 1:4776196/3‑70 ACTGCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCA > 1:4378742/1‑69 TGCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTT > 1:2382449/1‑55 TGCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGC > 1:1068716/1‑36 TGCCGTAAAACATGGCAGTGAGAGCAGAGATAGCG > 1:2772370/1‑35 GCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACC > 1:3122145/1‑71 GCCGTAAAACATGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACC > 1:1247002/1‑71 GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCT < 1:2015525/71‑1 GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTA < 1:2856732/68‑1 GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGC < 1:3486028/39‑1 GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTG < 1:254709/71‑1 GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTG < 1:4941226/71‑1 GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTG < 1:931942/37‑1 CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCA < 1:544591/63‑1 CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCA < 1:146976/55‑1 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA < 1:2792018/71‑1 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA < 1:2680795/71‑1 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA < 1:727050/71‑1 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA < 1:2480199/71‑1 GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/20463‑20390‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAA > AP009048/20407‑20476 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |