New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 18232660 (1.070)3 (0.070) 3/82 NT 5.1% intergenic (+18/‑137) degP/cdaR serine endoprotease (protease Do), membrane‑associated/DNA‑binding transcriptional regulator
?AP009048 = 182334 64 (1.410)intergenic (+26/‑129) degP/cdaR serine endoprotease (protease Do), membrane‑associated/DNA‑binding transcriptional regulator

CGTCTGTGCTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/182247‑182326
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccccttccCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCTGAATG  <  AP009048/182334‑182266
                                                                                                                                                     
CGTCTGTGCTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCA                                                                                <  1:523117/71‑1
      TGCTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCT                                                                          <  1:1982820/71‑1
      TGCTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCT                                                                          <  1:113686/71‑1
        CTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAAC                                                                              >  1:1945772/1‑65
        CTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACATGTTAATGCAGTAATCTCCCTCAACCCCTT                                                                         <  1:4564844/70‑1
           GCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTT                                                                         >  1:469149/1‑67
                CAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTT                                                                         <  1:567893/62‑1
                                     CACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTC                                                                        >  1:399365/1‑42
                                          TCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCCGTTTTCAGGA                                                            <  1:4711592/49‑1
                                            TACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCCGTTTTCAGGAAGGG                                                        >  1:2888048/1‑51
                                                 GTTAATGCAGTAATCTCCCTCAACCCCTTCCCGTTTTCA                                                               >  1:3111578/1‑39
                                                                      AACCCCTTCTCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGC          <  1:4630583/71‑1
                                                                      AACCCCTTCTCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGC          <  1:4624588/71‑1
                                                                       ACCCCTTCCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCG         <  1:84712/71‑1
                                                                       ACCCCTTCCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCG         >  1:1554127/1‑71
                                                                          CCTTCCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCT                  >  1:1799901/1‑59
                                                                          CCTTCCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTG                    >  1:172216/1‑57
                                                                           CTTCCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCTGA     <  1:3253844/71‑1
                                                                              CCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCTGAATG  >  1:676246/1‑71
                                                                              CCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCT       >  1:4036961/1‑66
                                                                              CCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATG                       >  1:1281348/1‑50
                                                                              CCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCAT                                    >  1:4820175/1‑37
                                                                              CCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCAT                                    >  1:4814148/1‑37
                                                                               CCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCTGA     <  1:2186535/67‑1
                                                                                                                                                     
CGTCTGTGCTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/182247‑182326
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccccttccCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCTGAATG  <  AP009048/182334‑182266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.