| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 223991 = | NA (NA) | 10 (0.200) | 5/92 | NT | NA | noncoding (221/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 224012 = | NA (NA) | noncoding (242/1542 nt) | rrsH | 16S ribosomal RNA | |||||
GACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/224065‑223991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGC > AP009048/224012‑224081 GACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCG < 1:4666953/71‑1GACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCG < 1:2609356/71‑1 ACCAGCTAGGGATCGTCGCCTAGGTGAGCCTTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGA < 1:5183913/71‑1 ACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGA < 1:995971/71‑1 ACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGA < 1:4318878/71‑1 ACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGA > 1:3577303/1‑71 CCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGAT > 1:5035320/1‑71 CCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGAT > 1:1306171/1‑71 CCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGAT > 1:3157077/1‑71 CCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGAT > 1:2337452/1‑71 CCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGAT > 1:2331412/1‑71 CCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGA < 1:106446/70‑1 CCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGA < 1:4529108/70‑1 CAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATG < 1:872784/71‑1 CAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATG < 1:3113950/71‑1 CAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATG < 1:342037/71‑1 AGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGG < 1:4202087/71‑1 AGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGG < 1:295121/71‑1 ctTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGG < 1:173661/68‑1 GCTATGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGG > 1:5008807/1‑70 GCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGG > 1:1977930/1‑70 TCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCG < 1:2112594/55‑1 CTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGG < 1:5052217/55‑1 TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGAT > 1:4889943/1‑52 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATG > 1:710959/1‑48 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATG > 1:4611627/1‑48 AGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATG > 1:3884812/1‑47 CCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGA < 1:743995/43‑1 CCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGA < 1:2516514/43‑1 CCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCG < 1:220357/42‑1 TTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGA < 1:111845/40‑1 TTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCG < 1:1243072/39‑1 TACCCCACCTACTAGCTAATCCCATCTGGGCACATCCG > 1:1952663/1‑38 ACCTACTAGCTAATCCCATCTGGGCACATCCGATGG > 1:4754104/1‑36 ACCTACTAGCTAATCCCATCTGGGCACATCCGATGG > 1:3726296/1‑36 ACCTACTAGCTAATCCCATCTGGGCACATCCGATGG > 1:2325807/1‑36 TCCCATCTGGGCACATCCGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAG > 1:4510082/1‑71 TCCCATCTGGGCACATCCGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAG > 1:3253662/1‑71 TCCCATCTGGGCACATCCGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACG < 1:3999693/63‑1 TCCCATCTGGGCACATCCGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACG < 1:1252096/63‑1 CCCATCTGGGCACATCCGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGC > 1:2847045/1‑71 CCATCTGGGCACATCTGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCC < 1:4796324/66‑1 CATCTGGGCACATCCGATGGGATTAGCTAGTAGGTGGGGTA < 1:3434032/41‑1 CATCTGGGCACATCCGATGGGATTAGCTAGTAGGTGGGGTA < 1:40670/41‑1 CATCTGGGCACATCCGATGGGATTAGCTAGTAGGTGGGGTA < 1:4439791/41‑1 CACATCCGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCG > 1:2366963/1‑49 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCT < 1:3711/51‑1 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGAC < 1:5162288/71‑1 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGAC < 1:4919584/71‑1 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGAC > 1:2698088/1‑71 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGA < 1:4386658/62‑1 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGG < 1:1340458/57‑1 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGC < 1:33110/54‑1 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAG > 1:200615/1‑53 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACG < 1:2670629/45‑1 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACG < 1:1126261/45‑1 GATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACG < 1:4741514/45‑1 ATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGAC > 1:4530568/1‑70 ATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACC < 1:894233/71‑1 ATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACC < 1:2545571/71‑1 ATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGAC > 1:3798370/1‑70 ATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCG < 1:471407/41‑1 ATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGG > 1:4595310/1‑39 ATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACC < 1:5040817/71‑1 TGGGATTAGCTAGTAGGTTGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGTATGACC < 1:824975/70‑1 TGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACC < 1:1389862/70‑1 TGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGAC > 1:139401/1‑69 GGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAG > 1:503533/1‑71 GGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCA < 1:3495371/70‑1 GGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGAT < 1:2812452/65‑1 GGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGA > 1:909016/1‑61 GGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGA > 1:2818360/1‑59 GGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGA > 1:111724/1‑59 GGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCT > 1:4618655/1‑57 GGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCT < 1:228469/57‑1 GGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGC < 1:2206558/51‑1 GGATTAGCTAGTAGGTGGGGTAACGGCTCCCCTAGGCGA > 1:4738202/1‑39 GGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGC < 1:1026335/71‑1 GGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGC < 1:933455/71‑1 GGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGC > 1:1069232/1‑71 GGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGC > 1:4956437/1‑71 GGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGC < 1:423933/71‑1 GGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAG < 1:1313668/70‑1 GGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAG < 1:3198492/70‑1 GGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGAT > 1:152369/1‑64 GGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGA < 1:2507820/58‑1 GACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/224065‑223991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGC > AP009048/224012‑224081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |