| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 225078 = | NA (NA) | 6 (0.120) | 5/88 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA | |||||
Only 100 of 184 total aligned reads displayed.
GGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225154‑225078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactccaTGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACAC > AP009048/225100‑225169 GGAACGTCTTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:177439/1‑71 GGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:910307/1‑71 GGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:540807/1‑71 GAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGAC < 1:942800/71‑1 GAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGAC < 1:4079554/71‑1 GAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGAC > 1:1343114/1‑71 GAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGAC < 1:5108629/71‑1 AACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACT > 1:2725857/1‑71 AACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACT > 1:4738186/1‑71 AACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACT > 1:4231858/1‑71 AACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:1802568/1‑69 ACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC < 1:1380301/71‑1 ACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:159472/1‑68 CGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC > 1:4429082/1‑70 CGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC > 1:4327763/1‑70 CGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC > 1:493493/1‑70 CGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC > 1:1702470/1‑70 CGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC > 1:860643/1‑70 GTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCA < 1:2788192/71‑1 GTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCC > 1:3497536/1‑70 ATTCACCGTGGCATTCTGATCCAGGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC > 1:413817/1‑67 ATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC > 1:1900229/1‑67 TTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGAC < 1:825830/64‑1 TTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:3064236/1‑63 TCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC > 1:4330902/1‑65 ACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:3020516/1‑60 CATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCC < 1:1008268/57‑1 CATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGAC > 1:1381617/1‑54 CATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGAC > 1:3369069/1‑54 CTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:834498/1‑49 CTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:2500207/1‑49 CTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:1520179/1‑49 TGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:2862100/1‑48 TCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGAC < 1:253902/46‑1 ACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:4206579/1‑42 CGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC > 1:2225713/1‑44 CGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACT > 1:4578905/1‑43 GATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:4970349/1‑40 TTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCA < 1:4146103/43‑1 CTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA > 1:3765808/1‑35 GCGATTCCGACTTCATGGAGTCGAGTTGCAGACTC > 1:329705/1‑35 ATGGAGTCGAGTTGCAGACTCCATGAAGTCGGAATCGCTA < 1:3231960/40‑1 GGAGTCGAGTTGCAGACTCCATGAAGTCGGAATCGCTAGTAATCGTGG > 1:2108372/1‑48 GACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTcg < 1:4471112/70‑3 GACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:2759736/70‑1 GACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:2278569/70‑1 GACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:656957/70‑1 GACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:1414564/70‑1 GACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:949893/70‑1 GACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTT > 1:3665833/1‑69 GACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTT < 1:3597514/69‑1 GACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGATCCCGGGCCTTG > 1:3440245/1‑70 GACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATC‑‑AATGCCACGGTGAATACGTTCCCGGGCCTTGTAC < 1:1262109/71‑1 ACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTA < 1:2430080/71‑1 ACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTA < 1:373287/71‑1 CTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTAC < 1:642601/71‑1 CTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTA > 1:1749129/1‑70 CTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTA > 1:4088504/1‑70 TCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTt < 1:688025/67‑2 TCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA > 1:3749787/1‑71 TCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA > 1:199462/1‑71 TCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:3255224/67‑1 TCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCC < 1:5042753/59‑1 TCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:2667903/48‑1 TCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAAT > 1:595629/1‑39 TCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAAT > 1:3947276/1‑39 CATGAAGTCGTAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:3539807/65‑1 CATGAAGTCGGATTCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACG > 1:3212477/1‑52 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAAa > 1:1432362/1‑36 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACA > 1:1720076/1‑71 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACA > 1:2550993/1‑71 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACA > 1:1440879/1‑71 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACA > 1:3784883/1‑71 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACAC < 1:4466294/70‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACAC < 1:4068519/70‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA < 1:751318/69‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA < 1:2032699/69‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA < 1:1550154/69‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA < 1:296376/69‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA < 1:1112664/69‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA < 1:1966444/69‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA < 1:3340057/69‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTG < 1:4632649/65‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCCTGTACA < 1:4877/69‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCG > 1:1081921/1‑58 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTC < 1:2868291/55‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACG > 1:1658150/1‑52 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:4485389/46‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:2165870/46‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:2245175/46‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACG < 1:4894115/43‑1 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACG > 1:932029/1‑43 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAA < 1:1158835/36‑1 CATGAAGTCGGAATCGCTAGTAATAGTGGATCAGAAAGCC > 1:4812245/1‑40 CATGAAGTCGGAATCGCTAGCAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTT < 1:2992503/64‑1 ATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACAC > 1:4652312/1‑71 ATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACA > 1:3692503/1‑70 ATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGG < 1:4835132/58‑1 ATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAA > 1:3093328/1‑35 ATGAAGACGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATA > 1:5249/1‑49 GGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225154‑225078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactccaTGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACAC > AP009048/225100‑225169 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |