| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 225889 = | NA (NA) | 4 (0.080) | 3/88 | NT | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 225907 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA | |||||
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225964‑225889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacactATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA > AP009048/225907‑225975 ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:124358/1‑70ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:4430614/1‑70ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:4254780/1‑70ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:1498141/1‑70 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA > 1:5088695/1‑71 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA > 1:4208589/1‑71 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC < 1:4903866/70‑1 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC < 1:1622796/70‑1 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC < 1:1077645/70‑1 TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATTATAGTGTGTCGAAACACA > 1:3865714/1‑71 TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:2634583/1‑71 TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:3615914/1‑71 TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC > 1:637854/1‑70 TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC > 1:837185/1‑70 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTGAGTTAATGATAGTGTGTCGAAACACAC > 1:2267014/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:1048076/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:3319209/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:3027278/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:2141055/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:722994/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:1180526/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:1569766/1‑70 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA < 1:3351600/70‑1 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA < 1:3357660/70‑1 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA < 1:3571057/70‑1 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA > 1:3887375/1‑68 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:4423973/1‑66 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:4943279/71‑1 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:2274372/71‑1 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:4479167/71‑1 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC < 1:1203928/70‑1 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC < 1:2409323/70‑1 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC < 1:5188902/70‑1 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC < 1:2694334/70‑1 ATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA < 1:2703581/68‑1 TTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:2724990/67‑1 TTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:1970949/1‑65 TTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:4861966/1‑65 TTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA > 1:3168873/1‑62 TCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:4793672/1‑64 CAGTTCCCCCGGTTCGGCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:3483054/1‑58 CAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC < 1:1724334/61‑1 AGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:2788179/1‑62 AGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:2184684/1‑62 CCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT > 1:2336122/1‑59 CCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA < 1:5102898/50‑1 TCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:2650580/1‑45 TCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:3713837/1‑45 CGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:4986213/1‑49 CGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:4258817/1‑49 CGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:4484081/1‑48 CTATGGATTCAGTTAATGATAGTGTGTCGAAACAC < 1:3299381/35‑1 TGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:4864201/35‑1 GATAGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCG < 1:5038097/58‑1 GATAGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATG < 1:4319152/48‑1 GATAGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATG < 1:5130873/48‑1 ATAGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATGAG < 1:474161/49‑1 ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG < 1:1175691/71‑1 ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG < 1:1553775/71‑1 ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG < 1:5098414/71‑1 ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG < 1:4769909/71‑1 ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACT < 1:4928291/52‑1 gACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC < 1:4673235/55‑1 CACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGA < 1:1801895/71‑1 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAGCTGAAA > 1:4939787/1‑54 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG > 1:5052133/1‑71 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG > 1:5041989/1‑71 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAA < 1:3825998/53‑1 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGG > 1:118924/1‑45 CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGG < 1:2292284/71‑1 CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGG < 1:532279/45‑1 CACTATCATTAACTGAATCCATAGGTTAATGAGGCG < 1:689989/36‑1 ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGTAACTGAAACATCTAAGTACCCCGAGGA < 1:4957802/71‑1 ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGA < 1:2078546/71‑1 ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGA < 1:425774/71‑1 ACTATCATTAACTGAATCCATAGGTTAATGAGGCGA < 1:3169373/36‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA < 1:1935594/71‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA < 1:4369047/71‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA < 1:202714/71‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACAT < 1:1473650/54‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTG < 1:1176582/48‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCG < 1:4245072/39‑1 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA > 1:1245314/1‑70 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA > 1:3734418/1‑70 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCC < 1:467935/64‑1 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCC < 1:3472215/64‑1 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACC > 1:1186690/1‑62 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTA < 1:1464090/56‑1 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC < 1:348165/51‑1 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAA < 1:841637/49‑1 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAAC > 1:1154605/1‑45 ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225964‑225889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacactATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA > AP009048/225907‑225975 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |