New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 226403	NA (NA)	3 (0.060)	3/90	NT	NA	noncoding (645/2904 nt)	rrlH	23S ribosomal RNA
	?	AP009048	= 226408	NA (NA)					noncoding (650/2904 nt)	rrlH	23S ribosomal RNA

TATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/226329‑226403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttaacGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCTG  <  AP009048/226408‑226339                                                                                                                                                   TATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTC                                                                             <  1:4174953/70‑1  ATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCT                                                                            >  1:2731903/1‑70  ATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTC                                                                             <  1:761904/69‑1   TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACTGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           >  1:2217945/1‑70   TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          <  1:1195870/71‑1   TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          <  1:2172954/71‑1   TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1927778/70‑1   TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           >  1:2915584/1‑70   TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:976314/70‑1   TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           >  1:4377431/1‑70   TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:2590512/70‑1   TAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:523301/70‑1    AATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         >  1:3066576/1‑71    AATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         >  1:3198441/1‑71    AATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         >  1:2604731/1‑71     ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        <  1:3325758/71‑1     ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        <  1:2233364/71‑1     ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         <  1:634847/70‑1     ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         <  1:1106646/70‑1     ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTC                                                                             >  1:3827622/1‑66      TGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTC                                                                             >  1:1900364/1‑65           CAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          >  1:4726270/1‑63             GCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:4708459/60‑1              CGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           >  1:38840/1‑59               GACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          <  1:556067/59‑1                 CTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:3688795/56‑1                  TTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        >  1:1676179/1‑58                   TATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGTAGGGAAACCGAGTCTTAACaga                                                                     >  1:2755300/1‑57                    ATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAACGCCCAGTTAAGACT                                                          <  1:761809/70‑1                       TTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:2064928/50‑1                       TTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:2136932/50‑1                       TTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:4951785/50‑1                       TTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1508282/50‑1                        TCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAA                                                                         >  1:2381480/1‑51                             AGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        >  1:1796542/1‑47                                AAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1037042/41‑1                                 AGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAACGCCCA                                                                   >  1:2818045/1‑48                                 AGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        >  1:1835052/1‑43                                 AGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        >  1:4422302/1‑43                                 AGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:4833945/40‑1                                  GGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC                                                                        >  1:3341342/1‑42                                  GGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          <  1:4831119/40‑1                                  GGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1310090/39‑1                                  GGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:4624298/39‑1                                   GTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTA                                                                          <  1:601042/39‑1                                   GTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:4652174/38‑1                                   GTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1890998/38‑1                                     TAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:3892354/36‑1                                     TAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTT                                                                           <  1:1437189/36‑1                                       ACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAACGCCCAGTTAAGACTCG                                                        <  1:2243604/53‑1                                                  GAGCCGAAGGGAAACCGAGTCTTAACGCCCAGTTA                                                               <  1:308629/35‑1                                                                      CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       >  1:2584529/1‑71                                                                      CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       >  1:450145/1‑71                                                                      CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       <  1:876594/71‑1                                                                      CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       <  1:571377/71‑1                                                                      CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       <  1:4242062/71‑1                                                                      CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGT       >  1:2062691/1‑71                                                                      CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAG        >  1:328072/1‑70                                                                      CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAG        >  1:334162/1‑70                                                                      CTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAAT             >  1:4555223/1‑65                                                                       TTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTC      >  1:4681940/1‑71                                                                       TTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAAT             <  1:2526226/64‑1                                                                       TTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACC                         <  1:2702451/52‑1                                                                        TAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     >  1:4355218/1‑71                                                                        TAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     >  1:4817146/1‑71                                                                        TAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAA              >  1:3822770/1‑62                                                                        TAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACC                         >  1:1657880/1‑51                                                                        TAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATT                                  >  1:2163289/1‑42                                                                        TAACGCCCAGTTAAGACTCGGTGTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     >  1:4718676/1‑71                                                                         AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGC    >  1:4737656/1‑71                                                                         AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGC    >  1:152499/1‑71                                                                         AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     >  1:2024480/1‑70                                                                         AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     >  1:1555164/1‑70                                                                         AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTC      <  1:767566/69‑1                                                                         AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTT                       >  1:4521112/1‑52                                                                         AACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATT                                  <  1:3355281/41‑1                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:5052406/1‑71                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:4431482/1‑71                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:4657260/1‑71                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:4577404/1‑71                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:4279067/1‑71                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   >  1:4257319/1‑71                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   <  1:2141902/71‑1                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   <  1:2257377/71‑1                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCT   <  1:3246705/71‑1                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCG     <  1:1816501/69‑1                                                                          ACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGG                               >  1:1017750/1‑43                                                                           CGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCTG  <  1:2277580/71‑1                                                                           CGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAA              <  1:4369397/59‑1                                                                           CGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCT                    <  1:2999437/53‑1                                                                           CGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTG                      >  1:3215293/1‑51                                                                                                                                                   TATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATAGGGGAGCCGAAGGGAAACCGAGTCTTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/226329‑226403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttaacGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCTG  <  AP009048/226408‑226339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.