| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 226815 = | NA (NA) | 3 (0.060) | 3/96 | NT | NA | noncoding (1057/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 226840 = | NA (NA) | noncoding (1082/2904 nt) | rrlH | 23S ribosomal RNA | |||||
CTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/226886‑226815‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCA > AP009048/226840‑226909 CTTCCGCGCAGGCGGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAAC > 1:2969368/1‑70CTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA > 1:2511122/1‑71CTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA > 1:589924/1‑71CTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA > 1:1575857/1‑71CTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA > 1:2313846/1‑71CTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA > 1:4558120/1‑71CTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA > 1:452678/1‑71CTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA > 1:1798195/1‑71 TTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACAT > 1:1298277/1‑71 TTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACAT > 1:4512682/1‑71 TTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACAT > 1:3500811/1‑71 TTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA > 1:2744556/1‑70 CCGCGCAGGCCGACTCGACCAGTGATCTATTACGCTTTCTTTAAATGATGTCTGCTTCTAAGCCAACA < 1:1371221/68‑1 CCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA < 1:2293173/68‑1 CCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA < 1:1576235/68‑1 CCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA < 1:3004379/68‑1 CGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACA < 1:3869085/67‑1 CTCGACCAGTGAGATATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACAT < 1:2560696/56‑1 GACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACAT < 1:2544383/53‑1 CAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACAT > 1:3338005/1‑50 CAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAAC > 1:4326220/1‑48 CAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAAC > 1:4470998/1‑48 CAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAAC > 1:1391997/1‑48 CAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAAC > 1:601893/1‑48 ATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAAC > 1:2513385/1‑39 ATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAAC < 1:2336874/39‑1 ATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAAC < 1:1696210/39‑1 TACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACAT < 1:2771332/39‑1 TACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAAC > 1:4577877/1‑37 TTAAATGATGGCTGCTTCTAAGCCAACATTTAAAGAAAGCGTAA < 1:1690327/44‑1 TGATGGCTGCTTCTAAGCCAACATTTAAAGAAAGCGTAATAGCTCA > 1:1924708/1‑46 ATGGCTGCTTCTAAGCCATCATTTAAAGAAAGCGTAATAGCTCA < 1:1161430/44‑1 cCATTTAAAGAAAGCGTAATAGCTCACTGATCGAGTCGTCCTGCGCGGAAGATGTAACGGGGCTAAGCCAg < 1:2506227/70‑2 CATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:3096137/1‑71 CATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:4912896/1‑71 CATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:1899007/1‑71 CATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:4166805/1‑71 CATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTA < 1:3364980/64‑1 CATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGC > 1:4605641/1‑43 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGC < 1:3648017/71‑1 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGC < 1:267090/71‑1 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:3096443/1‑70 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:64045/1‑70 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:4630182/1‑70 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:1447367/1‑70 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG < 1:2499916/70‑1 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:4463502/1‑70 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG < 1:2912892/70‑1 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:3046157/1‑70 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:3184672/1‑70 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATG > 1:3100536/1‑70 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAA > 1:4032648/1‑55 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAA > 1:1678746/1‑48 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGC > 1:1165125/1‑38 ATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGACGG > 1:886005/1‑37 TTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCA > 1:693793/1‑71 TTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTA > 1:2485617/1‑53 TTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAG < 1:1080575/48‑1 TTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAA < 1:3546650/47‑1 TTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTG < 1:4614657/40‑1 TTTAAAGAAAGCGTAATAGCTCACTGGTCGACTCGGCCTGCGCGGAAGATGT < 1:4031759/52‑1 CTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/226886‑226815‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCA > AP009048/226840‑226909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |