| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 228057 = | NA (NA) | 5 (0.100) | 3/92 | NT | NA | noncoding (2299/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 228076 = | NA (NA) | noncoding (2318/2904 nt) | rrlH | 23S ribosomal RNA | |||||
Only 100 of 102 total aligned reads displayed.
CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/228131‑228057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggaGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT > AP009048/228076‑228145 CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:3844591/71‑1CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:2607354/71‑1 agCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:2422412/68‑1 ACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA < 1:314361/71‑1 ACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA < 1:2084383/71‑1 ACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:2149589/70‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:3474104/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:2594996/1‑71 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:2427858/71‑1 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:252149/71‑1 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:3264547/1‑70 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1683624/1‑70 TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:2180908/1‑71 GCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG > 1:3479852/1‑69 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:4315986/69‑1 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTCATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:3693169/65‑1 TCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:4978598/1‑66 TCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:835314/66‑1 TCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:3721012/1‑65 CGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:288174/1‑67 GCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG > 1:4549212/1‑65 GCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:4004168/64‑1 GTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:5008749/1‑58 TCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA < 1:2419190/57‑1 CACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1101666/1‑57 ACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:3699403/1‑56 ACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:3816205/1‑56 ACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC > 1:3116937/1‑54 TCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:2134803/54‑1 TCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:373151/52‑1 TCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:1270048/52‑1 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:3495124/46‑1 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:1385495/46‑1 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC > 1:2362659/1‑44 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:3735739/44‑1 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC > 1:2483854/1‑44 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1185928/1‑44 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:501913/1‑43 AGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA < 1:345812/42‑1 GCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:2423233/40‑1 CTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:2145597/42‑1 CTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:167306/42‑1 CTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:3401219/35‑1 TTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:4279928/36‑1 ACCTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGC < 1:3960940/69‑1 ACCTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGC < 1:795886/69‑1 ACCTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGC < 1:3191750/69‑1 CCTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAG > 1:4571590/1‑71 CTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGC < 1:1301703/65‑1 aaCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAG > 1:1168125/3‑69 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:539878/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:5013740/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:4789376/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAG < 1:1471310/70‑1 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGG < 1:2697192/59‑1 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTG < 1:2959068/45‑1 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTG < 1:1939601/45‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT < 1:1254022/71‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:869515/1‑71 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:2815322/1‑71 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT < 1:2615167/71‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:2360589/1‑71 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG < 1:3326290/70‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG < 1:1120748/70‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG < 1:1269787/70‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGC < 1:3923236/67‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGT > 1:3211665/1‑59 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGC > 1:934719/1‑55 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGC > 1:4476287/1‑51 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGC > 1:923657/1‑49 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:3914672/1‑70 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGA > 1:597493/1‑62 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGC < 1:2973167/54‑1 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA > 1:3945354/1‑44 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA > 1:519061/1‑44 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGT < 1:3919628/42‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGTCTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGC < 1:3626535/65‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:600186/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:844723/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:977109/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:527009/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:3865002/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:193902/1‑71 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:2177469/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:2180641/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:3375296/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:3125312/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:3116049/1‑71 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:3100822/1‑71 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:2713170/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAA > 1:4899077/1‑62 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGC > 1:4563626/1‑53 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGGGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:1202198/71‑1 AGGTTAGTGTAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:1021946/1‑70 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:3440101/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:2108947/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:3540586/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:895374/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:1071428/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:5124986/1‑70 CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/228131‑228057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggaGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT > AP009048/228076‑228145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |