| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 655242 = | NA (NA) | 4 (0.080) | 4/94 | NT | NA | coding (962/981 nt) | insH | IS5 element protein |
| ? | AP009048 | 655260 = | NA (NA) | coding (980/981 nt) | insH | IS5 element protein | |||||
Only 100 of 189 total aligned reads displayed.
GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/655314‑655242‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGG > AP009048/655260‑655328 GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:1005638/1‑71GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:967298/1‑71GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:68439/1‑71GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:580545/1‑71GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:5107860/1‑71GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:3745789/1‑71GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:3694275/1‑71GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:1870814/1‑71GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:1610608/1‑71GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:1474701/1‑71GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCC < 1:4257831/70‑1 tATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATATCTCCCA < 1:2026868/69‑1 AATCAGCCTATTTAGACCGTTTCTTCGCTATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA < 1:3157620/70‑1 AATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCAC < 1:1445344/71‑1 AATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA < 1:365630/70‑1 ATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACT < 1:750636/71‑1 ATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACT > 1:5130284/1‑71 ATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACT < 1:4103478/71‑1 ATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACT < 1:4485139/71‑1 ATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCAC < 1:3814407/70‑1 TCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCAgt > 1:2695275/1‑68 TCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACT > 1:107992/1‑70 ATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:3037712/1‑61 TTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:4792410/1‑59 TTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTCAGTGGGAGAGATCTCACTAAAAACTGGG > 1:2119149/1‑71 TAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:2888006/1‑58 CGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATATCTCCCA > 1:831120/1‑53 TCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCC < 1:3352415/48‑1 CGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:4079464/1‑45 CGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:4914238/1‑45 CATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:3880247/1‑42 TTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:4153992/1‑40 TAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCA > 1:4076697/1‑38 TTAGTGAGATCTCTCCCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCT > 1:4667506/1‑70 AGATCTCTCCCACTGAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCA > 1:1893815/1‑70 CACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGG > 1:3232030/1‑52 CACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAAT > 1:335843/1‑49 CACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAA > 1:100380/1‑48 CACTAAAAACTGGGGATAACGCCTTAAATGGCGAA > 1:90471/1‑35 ACTAAAAACTGTGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGTCATTTA < 1:6384/68‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG > 1:4318243/1‑71 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG > 1:130682/1‑71 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG > 1:5005416/1‑71 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG > 1:582881/1‑71 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG < 1:3421974/71‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG < 1:2551722/71‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG > 1:2806400/1‑71 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACG < 1:260952/70‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACG < 1:4831555/70‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACG < 1:4700826/70‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACG < 1:1902431/70‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTAC < 1:3316509/69‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTAC < 1:3257665/69‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTAC < 1:4219079/69‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTAC < 1:1618087/69‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTAC < 1:1965726/69‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTAC < 1:2031451/69‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTA < 1:313575/68‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTA < 1:4115504/68‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTA < 1:4400183/68‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTA < 1:5058436/68‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTA < 1:1638416/68‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTA < 1:3441977/68‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTA < 1:3622793/68‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTT < 1:1544041/67‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATT < 1:2152897/66‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATT < 1:3844895/66‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAA > 1:3089951/1‑60 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAA > 1:4948862/1‑60 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAA > 1:768361/1‑60 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAA > 1:2411962/1‑60 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCT > 1:5012000/1‑53 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTA < 1:1226852/45‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGGCTAAATAGGCTGATTCAAGGCATTTACG < 1:3174062/70‑1 ACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAA > 1:3916362/1‑38 ACTAAAAACTGGGGATAACGACTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTA < 1:1268996/68‑1 CTAAGAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG > 1:40033/1‑70 CTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATT < 1:839727/65‑1 CTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATT < 1:1738333/65‑1 CTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTA < 1:526167/44‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG > 1:4969579/1‑69 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG > 1:3463632/1‑69 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGG > 1:4633596/1‑69 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTT < 1:2357205/65‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATT < 1:4201763/64‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAG < 1:1772823/59‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAG < 1:2405889/59‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAA < 1:1017201/58‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTC < 1:4471498/56‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTC < 1:851939/56‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCT < 1:2489486/51‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGG > 1:4530350/1‑49 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATA > 1:1512851/1‑47 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATA > 1:4277909/1‑47 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAAT > 1:4621742/1‑46 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAAT > 1:408520/1‑46 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTA < 1:2346311/43‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCT < 1:3052701/42‑1 TAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACG < 1:2457358/38‑1 TAAAAACTGGGGATAACGCCTCAAATGGCGAAGAAACGGTCTA < 1:1380687/43‑1 GAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/655314‑655242‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGG > AP009048/655260‑655328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |