| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 950019 | 62 (1.100) | 4 (0.080) | 3/90 | NT | 8.0% | intergenic (‑29/‑71) | ycaN/ycaK | predicted DNA‑binding transcriptional regulator/conserved hypothetical protein |
| ? | AP009048 | = 950033 | 37 (0.750) | intergenic (‑43/‑57) | ycaN/ycaK | predicted DNA‑binding transcriptional regulator/conserved hypothetical protein | |||||
CGGGCCACGGCAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/949944‑950019‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcctgTAAACGTGATGATTCAGGATGAGTTAATGAAGGATTTTCACTAATGCGGATGAATATGTCTGACT < AP009048/950033‑949969 CGGGCCACGGCAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCA > 1:3870040/1‑71CGGGCCACGGCAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCA < 1:5063402/71‑1 CACGGCAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCT > 1:969201/1‑70 TGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATACTTCATTAACTCAT > 1:4880853/1‑53 GGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCC < 1:3787611/54‑1 CAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGTAAACGTGATGATTCAG < 1:2549069/71‑1 AGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCT > 1:1828141/1‑50 TCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGTAAACGTGATGATTCAGGAT < 1:2329107/59‑1 ATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTGTAAACGTGATGATTCAGGATGA > 1:2986809/1‑59 ATCCGCATTAGTGAAAATACTTCATTAACTCATCCTGTAAACGTGATGATTCAGGATGA > 1:61124/1‑59 TCCTGTAAACGTGATGATTCAGGATGAGTTAATGAAGGATTTTCACTAATGCGGATGAATATGTCTGACT < 1:2930297/70‑1 CTGTAAACGTGATGATTCAGGATGAGTTAATGAAGGATTTTCACTAA < 1:4530875/47‑1 GTAAACGTGATGATTCAGGATGAGTTAATGAAGGATTTT < 1:1954006/39‑1 GTAAACGTGATGATTCAGGATGAGTTAATGAAGGATTT < 1:4175072/38‑1 CGGGCCACGGCAAAGAAAGTGGCAAAGTCAGACATATTCATCCGCATTAGTGAAAATCCTTCATTAACTCATCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/949944‑950019‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcctgTAAACGTGATGATTCAGGATGAGTTAATGAAGGATTTTCACTAATGCGGATGAATATGTCTGACT < AP009048/950033‑949969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |