| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 958005 | 48 (0.850) | 3 (0.060) | 3/88 | NT | 6.0% | intergenic (+129/‑70) | ycaP/serC | conserved inner membrane protein/3‑phosphoserine/phosphohydroxythreonine aminotransferase |
| ? | AP009048 | = 958017 | 52 (1.070) | intergenic (+141/‑58) | ycaP/serC | conserved inner membrane protein/3‑phosphoserine/phosphohydroxythreonine aminotransferase | |||||
AAGCCACATTTTTGCCCTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/957931‑958005‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacaggTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTTGA < AP009048/958017‑957948 AAGCCACATTTTTGCCCTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCA > 1:3115409/1‑71AAGCCACATTTTTGCCCTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCA < 1:2824149/71‑1 CCACATTTTTGCCCTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAG > 1:3169301/1‑71 TTGCCCTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCAC < 1:3863893/61‑1 TCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGTAATACATTATTCC > 1:1999117/1‑59 TCATTGCGATGTGTGTCACTGAATGATAAAACCGATAACCAC < 1:906262/42‑1 ATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGGTAATACATTATTCCTGTGGCT > 1:3596016/1‑64 TGAATGATAAAACCGATAGCCACAGGTAATACATTATT < 1:147381/38‑1 CCACAGGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAAC > 1:182321/1‑71 CCACAGGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAAC < 1:2658197/71‑1 CACAGGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAAT < 1:3440232/61‑1 ACAGGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCG < 1:1170491/71‑1 CAGGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGT < 1:2429804/71‑1 CAGGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGT < 1:4212819/71‑1 AGGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTT < 1:2300619/71‑1 AGGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTT < 1:681989/71‑1 GGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTTG < 1:3739412/71‑1 GGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTTG < 1:4904385/71‑1 GGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTTG < 1:5120352/71‑1 GGTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTTG < 1:580689/71‑1 GTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTTGA < 1:3731762/71‑1 GTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTTGA < 1:4995571/71‑1 GTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTTGA < 1:2935644/71‑1 GTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTT > 1:4891358/1‑69 AAGCCACATTTTTGCCCTCAACGGTTTTACTCATTGCGATGTGTGTCACTGAATGATAAAACCGATAGCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/957931‑958005‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacaggTAATACATTATTCCTGTGGCTATCGGTTTTATCATTCAGTGACACACATCGCAATGAGTAAAACCGTTGA < AP009048/958017‑957948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |