New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	1289322 =	31 (0.550)	4 (0.080)	4/94	NT	12.6%	intergenic (‑123/+37)	tyrT/purU	tRNA‑Tyr/formyltetrahydrofolate hydrolase
	?	AP009048	1289346 =	27 (0.520)					intergenic (‑147/+13)	tyrT/purU	tRNA‑Tyr/formyltetrahydrofolate hydrolase

TAATCGCCAGCAAAAATAACTGGTTACCTTTAATCCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1289361‑1289322 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaTTTTTGCTGGCGATTAAAGAATAATCGTTCGATTACCGTAAACAAAGACGCGCTGTGCCAGTACTTTGT  >  AP009048/1289346‑1289414                                                                                                               TAATCGCCAGCAAAAATAACTGGTTACCTTTAATCCGT                                                                         <  1:4901020/38‑1      GCCAGCAAAAATAACTGGTTACCTTTAATCCGTTA                                                                       >  1:4719160/1‑35             AAAATAACTGGTTACCTTTAATCCGTTATTTTTGCTGGCGATTAAA                                                     <  1:3132418/46‑1               AATAACTGGTTACCTTTAATCCGTTATTTTTGCTGGCGATTAAAGA                                                   >  1:1348732/1‑46                ATAACTGGTTACCTTTAATCCGTTATTTTTGCTGGCGATTAAAGAATAATCGTTCGATTACCGTAAACA                           >  1:5141692/1‑69                ATAACTGGTTACCTTTAATCCGTTATTTTTGCTGGCGATTAAAGAATAATCGTTCGATT                                     <  1:1325915/59‑1                                      TTATTTTTGCTGGCGATTAAAGAATAATCGTTCGATTACCGTAAACAAAGACGCGCTGTGCCAGTACTTTG   <  1:1906739/71‑1                                        ATTTTTGCTGGCGATTAAAGAATAATCGTTCGATTACCGTAAACAAAGACGCGCTGTGCCAGTACTTTGT  <  1:2526984/70‑1                                                                                                               TAATCGCCAGCAAAAATAACTGGTTACCTTTAATCCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1289361‑1289322 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaTTTTTGCTGGCGATTAAAGAATAATCGTTCGATTACCGTAAACAAAGACGCGCTGTGCCAGTACTTTGT  >  AP009048/1289346‑1289414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.