New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	2124135 =	43 (0.760)	3 (0.060)	3/92	NT	6.5%	coding (982/1371 nt)	cpsG	phosphomannomutase
	?	AP009048	2124152 =	48 (0.950)					coding (965/1371 nt)	cpsG	phosphomannomutase

CGCCGGTAATGTCGAAAACCGGACACGCCTTTATTAAAGAACGTATGCGCAAGGAAGACGCCATCTATGGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2124209‑2124135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACATTACCGGCGTGCCACCTGC  >  AP009048/2124152‑2124219                                                                                                                                                 CGCCGGTAATGTCGAAAACCGGACACGCCTTTATTAAAGAACGTATGCGCAAGGAAGACGCCATCTATGGT                                                                          >  1:1560237/1‑71                              TTTATTAAAGAACGTATGCGCAAGGAAGACGCCATCTATGGTG                                                                         <  1:1459609/43‑1                                TATTAAAGAACGTATGCGCAAGGAAGACGCCATCTATGGTGG                                                                        >  1:1633742/1‑42                                TATTAAAGAACGTATGCGCAAGGAAGACGCCATCTATGGTGG                                                                        >  1:4300549/1‑42                                    AAAGAACGTATGCGCAAGGAAGACGCCATCTATGGTGG                                                                        >  1:450583/1‑38                                                            GCCATCTATGGTGGCGTCTTCCTTGCGCATACGTTC                                                  <  1:5087983/36‑1                                                              CATCTATGGTGGCGTCTTCCTTGCGCATACGTTCTT                                                >  1:3039890/1‑36                                                                TCTATGGTGGCGTCTTCCTTGCGCATACGTTCTTTAATA                                           <  1:4561709/39‑1                                                                         GCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACATTACCGGCGTGCCACCTGC  <  1:1290848/71‑1                                                                                                                                                 CGCCGGTAATGTCGAAAACCGGACACGCCTTTATTAAAGAACGTATGCGCAAGGAAGACGCCATCTATGGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2124209‑2124135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACATTACCGGCGTGCCACCTGC  >  AP009048/2124152‑2124219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.