| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2358808 = | 64 (1.140) | 3 (0.060) | 3/88 | NT | 5.7% | coding (1492/1629 nt) | glpA | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding |
| ? | AP009048 | 2358839 = | 44 (0.910) | coding (1523/1629 nt) | glpA | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding | |||||
AATTCGCTTTCGCGCAGTGCATCTCCCCAGGCGATGGGTTGCACGCCTTTCCAGCGTTCGTTAAGGAAGGTGGAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2358884‑2358808‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaaagGCGTGCAACCCATCGCCTGGGGAGATGCACTGCGCGAAAGCGAATTTACCCGCTGGGTTTATCAGG > AP009048/2358839‑2358904 AATTCGCTTTCGCGCAGTGCATCTCCCCAGGCGATGGGTTGCACGCCTTTCCAGCGTTCGTTAAGGAAGGT > 1:4865660/1‑71 ATTCGCTTTCGCGCAGTGCATCTCCCCAGGCGATGGGTTGCACGCCTTTCCAGCGTTCGTTAAGGAAGGTG > 1:4286035/1‑71 TTCGCTTTCGCGCAGTGCATCTCCCCAGGCGATGGGTTGCACGCCTTTCCAGCGTTCGTTAAGGAAGGTG < 1:4890097/70‑1 CGCTTTCGCGCAGTGCATCTCCCCAGGCGATGGGTTGCACGCCTTTCCAGCGTTCGTTAAGGAAGGTGGA > 1:1121858/1‑70 GCTTTCGCGCAGTGCATCTCCCCAGGCGATGGGTTGCACGCCTTTCCAGCGTTCGTTAAGGAAGGTGGAA < 1:631266/70‑1 GCTTTCGCGCAGTGCATCTCCCCAGGCGATGGATTGCACGCCTTTCCAGCGTTCGTTAAGGAAGGTGGA > 1:1458786/1‑69 CTTTCGCGCAGTGCATCTCCCCAGGCGATGGGTTGCACGCCTTTCCAGCGTTCGTTAAGGAAGGTGGAAAG < 1:4698728/71‑1 CTTTCGCGCAGTGCATCTCCCCAGGCGATGGGTTGCACGCCTTTCCAGCGTTCGTTAAGGAAGGTGGAA < 1:2675193/69‑1 TTTCCAGCGTTCGTTAAGGAAGGTGGAAAGGCGTGCAACCCATCGCCT < 1:3166511/48‑1 TTCCAGCGTTCGTTAAGGAAGGTGGAAAGGCGTGCAACCCA < 1:2022645/41‑1 CCAGCGTTCGTTAAGGAAGGTGGAAAGGCGTGCAACCCATCGCCTGGGGAGATGCACTGC > 1:4571193/1‑60 TGGAAAGGCGTGCAACCCATCGCCTGGGGAGATGCACTGCGCGAAAGCGAATTTACCCGCT < 1:1217267/61‑1 GAAAGGCGTGCAACCCATCGCCTGGGGAGATGCACTGCGCGAAAGCGAATTTACCCGCTGGGTTTATCAGG < 1:2692718/71‑1 GAAAGGCGTGCAACCCATCGCCTGGGGAGATGCACTGCGCGAAAGCGAATTTACCCGCTGGGTTTATCAGG > 1:2965896/1‑71 GAAAGGCGTGCAACCCATCGCCTGGGGAGATGCAC > 1:2141014/1‑35 AAGGCGTGCAACCCATCGCCTGGGGAGATGCACTGCGCGAAAGCGAATTTACCCGCTGGGTTTATCA > 1:729689/1‑67 AATTCGCTTTCGCGCAGTGCATCTCCCCAGGCGATGGGTTGCACGCCTTTCCAGCGTTCGTTAAGGAAGGTGGAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2358884‑2358808‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaaagGCGTGCAACCCATCGCCTGGGGAGATGCACTGCGCGAAAGCGAATTTACCCGCTGGGTTTATCAGG > AP009048/2358839‑2358904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |