New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	2507021 =	49 (0.870)	4 (0.080)	3/90	NT	8.5%	coding (446/858 nt)	ypdC	predicted DNA‑binding protein
	?	AP009048	2507058 =	43 (0.870)					coding (483/858 nt)	ypdC	predicted DNA‑binding protein

TTGCCCGGCGGCATATTCACCACGCTACGGCAAAGATGCAGCAAACTTAACACCAGCGGCTGAATGATATTTTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2507096‑2507021 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgctGCATCTTTGCCGTAGCGTGGTGAATATGCCGCCGGGCAATTCGCAGCCGCGCGGCGATTTTCTCTAT  >  AP009048/2507058‑2507124                                                                                                                                                 TTGCCCGGCTGCATATTCACCACGCTACGGCAAAGATGCAGCAAACTTAACACCAGCGGCTGAATGATATT                                                                          <  1:1231072/71‑1  TGCCCGGCGGCATATTCCCCACGCTACGGCAAAGATGCAGCAAACTTAACACCAGCGGCTGAATGATATTT                                                                         >  1:2010014/1‑71   GCCCGGCGGCATATTCACCACGCTACGGCAAAGATGCAGCAAACTTAACACCAGCGGCTGAATGATATTT                                                                         >  1:1057099/1‑70    CCCGGCGGCATATTCACCACGCTACGGCAAAGATGCAGCAAACTTAACACCAGCGGCTGAATGATATTTT                                                                        <  1:1211496/70‑1      CGGCGGCATATTCACCACGCTACGGCAAAGATGCAGCAAACTTAACACCAGCGGCTGAATGATATTTTGCT                                                                     <  1:1280984/71‑1                        GCTACGGCAAAGATGCAGCAAACTTAACACCAGCGGCTGAATGATATTT                                                                         >  1:2796979/1‑49                           ACGGCAAAGATGCAGCAAACTTAACACCAGCGGCTGAATGATATTTTG                                                                       >  1:4800856/1‑48                                           AAACTTAACACCAGCGGCTGAATGATATTTTGCTGCATCTTTGCCGTAGCGTGGTGAATATGCCGCC                                    <  1:5137171/67‑1                                               TTAACACCAGCGGCTGAATGATATTTTGCTGCATCTTT                                                             <  1:270685/38‑1                                                  ACACCAGCGGCTGAATGATATTTTGCTGCATCTTTGCCGTAGCGTGGTGAATA                                           <  1:3061971/53‑1                                                  ACACCAGCGGCTGAATGATATTTTGCTGCATCTTTGCCGTAGCGTGGTGAATA                                           <  1:4846909/53‑1                                                                          GCTGCATCTTTGCCGTAGCGTGGTGAATATGCCGCCGGGCAATTCGCAGCCGCGCGGCGATTTTCTCTAT  <  1:3219271/70‑1                                                                           CTGCATCTTTGCCGTAGCGTGGTGAATATGCCGCCGGG                                 <  1:4483347/38‑1                                                                                                                                                 TTGCCCGGCGGCATATTCACCACGCTACGGCAAAGATGCAGCAAACTTAACACCAGCGGCTGAATGATATTTTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2507096‑2507021 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgctGCATCTTTGCCGTAGCGTGGTGAATATGCCGCCGGGCAATTCGCAGCCGCGCGGCGATTTTCTCTAT  >  AP009048/2507058‑2507124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.