New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AP009048 | 2535433 = | 46 (0.820) | 3 (0.060) | 3/88 | NT | 7.6% | coding (190/2016 nt) | ligA | DNA ligase, NAD(+)‑dependent |
? | AP009048 | 2535454 = | 33 (0.680) | coding (169/2016 nt) | ligA | DNA ligase, NAD(+)‑dependent |
ATGCGCGAACTGCGCGAGCTGGAAACCAAACATCCAGAACTGATTACGCCTGATTCGCCTACTCAACGTGTAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2535508‑2535433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggcgAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGTTCGCGCATCAGCCTGTCGTA > AP009048/2535454‑2535520 ATGCGCGAACTGCGCGAGCTGGAAACCAAACATCCAGAACTGATTACGCCTGATTCGCCTACTCAACGTGT < 1:4662886/71‑1 ATGCGCGAACTGCGCGAGCTGGAAACCAAACATCCAGAACTGATTACGCCTGATTCGCCTACTCAACGTGT < 1:4669091/71‑1 ATGCGCGAACTGCGCGAGCTGGAAACCAAACATCCAGAACTGATTACGCCTGATTCGCCTACTCAACGTG > 1:1913447/1‑70 ATGCGCGAACTGCGCGAGCTGGAAACCAAACATCCAGAACTGATTACGCCTGATTCGCCTACTCAACGTG < 1:3433669/70‑1 CGAACTGCGCGAGCTGGAAACCAAACATCCAGAACTGATTACGCCTGATTCGCCTACTCAACGTGTAGGCG < 1:3507927/71‑1 CGAACTGCGCGAGCTGGAAACCAAACATCCAGAACTGATTACGCCTGATTCGCCTACTCAACGTGTAG > 1:1397509/1‑68 GCTGGAAACCAAACATCCAGAACTGATTACGCCTGATTCGCCTACTCAACGTG < 1:591137/53‑1 AACCAAACATCCAGAACTGATTACGCCTGATTCGCCTACTCAACGTGTAG > 1:3305695/1‑50 GCCTACTCAACGTGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGG > 1:1152184/1‑50 TACTCAACGTGTAGGCGAATCAGGCGTAATCAGTTCTGTATGTTTGGTTT > 1:48902/1‑50 CAACGTGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGTTCGCGCATCAG > 1:2820352/1‑71 GTGTAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGTTCGCGCATCAGCCTG < 1:315777/71‑1 TAGGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGTTCGCGCATCAGCCTGTCG < 1:2396879/71‑1 GGCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGTTCGCGCATCAGCCTGTCGTA < 1:3282746/71‑1 GCGAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGTTCGCGCA < 1:1955934/57‑1 GAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGT < 1:3088026/48‑1 ATGCGCGAACTGCGCGAGCTGGAAACCAAACATCCAGAACTGATTACGCCTGATTCGCCTACTCAACGTGTAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2535508‑2535433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggcgAATCAGGCGTAATCAGTTCTGGATGTTTGGTTTCCAGCTCGCGCAGTTCGCGCATCAGCCTGTCGTA > AP009048/2535454‑2535520 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |