| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2727225 = | NA (NA) | 5 (0.100) | 5/92 | NT | NA | noncoding (616/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | AP009048 | 2727251 = | NA (NA) | noncoding (590/2904 nt) | rrlG | 23S ribosomal RNA | |||||
Only 100 of 102 total aligned reads displayed.
CGCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2727299‑2727225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaataTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTA > AP009048/2727251‑2727320 CGCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG < 1:282161/71‑1CGCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG < 1:3715798/71‑1 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGA < 1:896147/71‑1 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:2869224/1‑70 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:4102922/1‑70 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:1626977/1‑70 GCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG > 1:4390417/1‑70 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:2245627/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:3135723/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:404200/1‑71 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:4197638/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:4355864/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:4493334/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:4762218/1‑71 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:696246/71‑1 CTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:1223340/71‑1 TTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:1505462/1‑70 TTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:1468833/1‑70 TTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:3641780/1‑70 TTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:5164057/1‑70 TAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:3257615/1‑69 TAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:2996744/1‑69 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:4581332/70‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:2871945/70‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:3565230/70‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:1393272/70‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:1263585/69‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:4727166/69‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:2672864/69‑1 AGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:3862137/1‑68 CGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT > 1:1911413/1‑66 GTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:1547261/66‑1 GTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGA < 1:3935499/63‑1 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG < 1:2362752/61‑1 TGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA > 1:2843188/1‑63 TGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:2143726/62‑1 GACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:5154696/1‑60 CTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA < 1:4154477/60‑1 CTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:5075797/1‑58 GCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT > 1:4374241/1‑57 GTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:4548629/1‑54 GTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:2961809/1‑54 TACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT < 1:2366701/54‑1 TTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:4023604/49‑1 TTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCG < 1:279469/47‑1 TTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:4819472/1‑48 TGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:4745361/1‑46 TATAATGGGTCAGCGACTTATATTCTGTGGCAAGGTTAACCGAAT < 1:4531397/45‑1 ATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAAT > 1:69030/1‑44 ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA > 1:4666316/1‑42 ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:135901/40‑1 ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:3614149/40‑1 ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA > 1:327514/1‑40 ATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:192949/40‑1 TGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA > 1:2009686/1‑41 TCAGCGACTTATATTCTGTAGCAAGGTTAACCGAA < 1:2070784/35‑1 GACTTATATTCTGTAGCAAGGTTAACCGAATATAAGTCGCTGACCCATTATACAAAA > 1:2588234/1‑57 ACTTATATTCTGTAGCAAGGTTAACCGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACAC > 1:3070386/1‑71 TATTCTGTAGCAAGGTTAACCGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCT > 1:2638586/1‑70 TCTGTAGCAAGGTTAACCGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA < 1:1548473/60‑1 TAGCAAGGTTAACCGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGT < 1:46716/69‑1 GAATATAAGTCGCTGCCCCATTATACAAAAGGTACGCAGTCCCACGCCTAAGCGTGCTCCCACTGCTTG > 1:3043490/1‑69 GAATATAAGTCGCTGACCCATTATACAAAAGGTACTCAGTCACACGCCTAAGCGTGCTCCCACTGCT < 1:87698/67‑1 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTA > 1:4930751/1‑71 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTA > 1:4397438/1‑71 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTA > 1:4403496/1‑71 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCA > 1:1827101/1‑62 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGC > 1:2694569/1‑53 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGC > 1:3844019/1‑53 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAA > 1:165114/1‑51 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACAC > 1:881068/1‑45 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACA > 1:1799645/1‑44 GAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC < 1:3921353/43‑1 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTAC > 1:2241432/1‑71 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTAC > 1:3519797/1‑71 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTAC > 1:2079196/1‑71 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTAC > 1:4780123/1‑71 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTAC > 1:1030400/1‑71 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGC < 1:2259323/56‑1 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGC < 1:4413272/56‑1 AATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTC < 1:4271520/40‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG > 1:4419863/1‑71 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG < 1:4375665/71‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG < 1:3855625/71‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTAC < 1:1278500/70‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTAC < 1:4106381/70‑1 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCA > 1:2190216/1‑60 ATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCT > 1:3307705/1‑56 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG > 1:3211841/1‑70 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG > 1:3114451/1‑70 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG > 1:1590046/1‑70 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACG > 1:4426810/1‑70 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTT > 1:3273080/1‑65 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTT > 1:4473755/1‑65 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGC > 1:3819334/1‑54 TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGT > 1:4500863/1‑52 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTA > 1:953880/1‑71 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTA > 1:1537008/1‑71 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTT > 1:4900994/1‑64 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAG < 1:1865890/48‑1 CGCTTAGGCGTGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2727299‑2727225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaataTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTA > AP009048/2727251‑2727320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |