| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2885791 | 66 (1.170) | 8 (0.160) | 7/88 | NT | 12.2% | coding (85/2667 nt) | ygcB | conserved hypothetical protein, member of DEAD box family |
| ? | AP009048 | = 2885805 | 58 (1.190) | coding (71/2667 nt) | ygcB | conserved hypothetical protein, member of DEAD box family | |||||
CAAAAAGTATTTTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2885718‑2885791‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgataTTCATCTGTTAATTTATCATTGCCTTGATGTTGCTGCTGTTGCAGATTGCTGGTGGGATCAATCAGTCG < AP009048/2885805‑2885737 CAAAAAGTATTTTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAAT > 1:3648230/1‑70 AAAGTATTTTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGAT > 1:1953687/1‑70 AAAGTATTTTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGAT > 1:2414901/1‑70 AAAGTATTTTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGAT > 1:3234246/1‑70 TTTTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGAAATGATATTCATC > 1:499816/1‑71 TTTTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGAAATGATATTCATC > 1:1715567/1‑71 TTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATA > 1:1825530/1‑63 GTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGA < 1:4113848/56‑1 GATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATATTCATCTGTTAATTTATCA < 1:4447541/69‑1 GATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATA < 1:4246756/50‑1 GATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGAAATGATATTCATCTGTTAATTTAT > 1:3070478/1‑67 ATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATATTCATCTGTTAATTTATCAT < 1:1930109/69‑1 ATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATA < 1:1470565/49‑1 ATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATA < 1:3162031/49‑1 ATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATA < 1:3155796/49‑1 ATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATA < 1:1958572/49‑1 TTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATATTCATCTGTTAATTTATCATT > 1:4962304/1‑69 TGATACCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATATTCATCTGTTAATTTATCATT > 1:4410461/1‑68 ACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATATTCATCTGTTAAT > 1:4085190/1‑53 ACCAGCAATCTGCAACAGCAGCAACATCAAGGCAA > 1:947966/1‑35 AATGATATTCATCTGTTAATTTATCATTGCCTTGATGTTGCTGCTGT > 1:2218962/1‑47 ATGATATTCATCTGTTAATTTATCATTGCCTTGATGTTGCTGCTGTTGCAGATTGCTGGTGGGATCAAT > 1:4837449/1‑69 TGATATTCATCTGTTAATTTATCATTGCCTTGATGTTGCTGCTGTTGCAGATTGCTGGTGGGATCAATCAG > 1:4188466/1‑71 GATATTCATCTGTTAATTTATCATTGCCTTGATGTTGCTGCTGTTGCAGATTGCTGGTGGGATCAATCAGT > 1:3820156/1‑71 ATATTCATCTGTTAATTTATCATTGCCTTGATGTTGCTGCTGTTGCA > 1:1929775/1‑47 ATATTCATCTGTTAATTTATCATTGCCTTGATGTTGCTGCTGTTGCA > 1:4708885/1‑47 TATTCATCTGTTAATTTATCATTGCCTTGATGTTGCTGCTGTTGCAGATTGCTGGTGGGATCAATCAGTCG < 1:4361311/71‑1 ATTCATCTGTTAATTTATCATTGCCTTGATGTTGCT < 1:1340737/36‑1 CAAAAAGTATTTTGCAGTACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2885718‑2885791‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgataTTCATCTGTTAATTTATCATTGCCTTGATGTTGCTGCTGTTGCAGATTGCTGGTGGGATCAATCAGTCG < AP009048/2885805‑2885737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |